Gene : Solyc02g090540.2 S. lycopersicum ITAG2.4
Defline:  (1 of 4) 1.1.1.102 - 3-dehydrosphinganine reductase / KTS reductase Description:  Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7LTG0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase
Genomic Order:  2927 Name:  ? Solyc02g090540.2
Secondary Identifier:  ? PAC:36158477
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-5129 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc02g090540.2 0.5kb upstream 0.5kb upstream 2740 true SL2.50ch02: 52066907-52069646 Solanum lycopersicum
Solyc02g090540.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch02: 52069147-52069646 Solanum lycopersicum
Solyc02g090540.2 0.5kb downstream 0.5kb downstream 2740 true SL2.50ch02: 52066407-52069146 Solanum lycopersicum
Solyc02g090540.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch02: 52066407-52066906 Solanum lycopersicum
Solyc02g090540.2 1.0kb upstream 1.0kb upstream 3240 true SL2.50ch02: 52066907-52070146 Solanum lycopersicum
Solyc02g090540.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch02: 52069147-52070146 Solanum lycopersicum
Solyc02g090540.2 1.0kb downstream 1.0kb downstream 3240 true SL2.50ch02: 52065907-52069146 Solanum lycopersicum
Solyc02g090540.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch02: 52065907-52066906 Solanum lycopersicum
Solyc02g090540.2 2.0kb upstream 2.0kb upstream 4240 true SL2.50ch02: 52066907-52071146 Solanum lycopersicum
Solyc02g090540.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch02: 52069147-52071146 Solanum lycopersicum
Solyc02g090540.2 2.0kb downstream 2.0kb downstream 4240 true SL2.50ch02: 52064907-52069146 Solanum lycopersicum
Solyc02g090540.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch02: 52064907-52066906 Solanum lycopersicum
Solyc02g090540.2 5.0kb upstream 5.0kb upstream 7240 true SL2.50ch02: 52066907-52074146 Solanum lycopersicum
Solyc02g090540.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch02: 52069147-52074146 Solanum lycopersicum
Solyc02g090540.2 5.0kb downstream 5.0kb downstream 7240 true SL2.50ch02: 52061907-52069146 Solanum lycopersicum
Solyc02g090540.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch02: 52061907-52066906 Solanum lycopersicum
Solyc02g090540.2 10.0kb upstream 10.0kb upstream 12240 true SL2.50ch02: 52066907-52079146 Solanum lycopersicum
Solyc02g090540.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch02: 52069147-52079146 Solanum lycopersicum
Solyc02g090540.2 10.0kb downstream 10.0kb downstream 12240 true SL2.50ch02: 52056907-52069146 Solanum lycopersicum
Solyc02g090540.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch02: 52056907-52066906 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478048 5263 Asterids View MSA
123736848 5271 Pentapetalae View MSA
122788663 5272 Eudicot View MSA
122042834 5273 Angiosperm View MSA
121346352 5274 Embryophyte View MSA
123423987 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain