Gene : Solyc02g085220.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR12894:SF10 - VAM6/VPS39-LIKE PROTEIN Description:  Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 *--* TGFA1_MOUSE); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
Genomic Order:  2399 Name:  ? Solyc02g085220.2
Secondary Identifier:  ? PAC:36159166
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc02g085220.2 0.5kb upstream 0.5kb upstream 11794 true SL2.50ch02: 48181987-48193780 Solanum lycopersicum
Solyc02g085220.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch02: 48193281-48193780 Solanum lycopersicum
Solyc02g085220.2 0.5kb downstream 0.5kb downstream 11794 true SL2.50ch02: 48181487-48193280 Solanum lycopersicum
Solyc02g085220.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch02: 48181487-48181986 Solanum lycopersicum
Solyc02g085220.2 1.0kb upstream 1.0kb upstream 12294 true SL2.50ch02: 48181987-48194280 Solanum lycopersicum
Solyc02g085220.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch02: 48193281-48194280 Solanum lycopersicum
Solyc02g085220.2 1.0kb downstream 1.0kb downstream 12294 true SL2.50ch02: 48180987-48193280 Solanum lycopersicum
Solyc02g085220.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch02: 48180987-48181986 Solanum lycopersicum
Solyc02g085220.2 2.0kb upstream 2.0kb upstream 13294 true SL2.50ch02: 48181987-48195280 Solanum lycopersicum
Solyc02g085220.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch02: 48193281-48195280 Solanum lycopersicum
Solyc02g085220.2 2.0kb downstream 2.0kb downstream 13294 true SL2.50ch02: 48179987-48193280 Solanum lycopersicum
Solyc02g085220.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch02: 48179987-48181986 Solanum lycopersicum
Solyc02g085220.2 5.0kb upstream 5.0kb upstream 16294 true SL2.50ch02: 48181987-48198280 Solanum lycopersicum
Solyc02g085220.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch02: 48193281-48198280 Solanum lycopersicum
Solyc02g085220.2 5.0kb downstream 5.0kb downstream 16294 true SL2.50ch02: 48176987-48193280 Solanum lycopersicum
Solyc02g085220.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch02: 48176987-48181986 Solanum lycopersicum
Solyc02g085220.2 10.0kb upstream 10.0kb upstream 21294 true SL2.50ch02: 48181987-48203280 Solanum lycopersicum
Solyc02g085220.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch02: 48193281-48203280 Solanum lycopersicum
Solyc02g085220.2 10.0kb downstream 10.0kb downstream 21294 true SL2.50ch02: 48171987-48193280 Solanum lycopersicum
Solyc02g085220.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch02: 48171987-48181986 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469482 5263 Asterids View MSA
123737407 5271 Pentapetalae View MSA
122791369 5272 Eudicot View MSA
122042923 5273 Angiosperm View MSA
121345932 5274 Embryophyte View MSA
123428312 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain