Gene : Solyc01g096870.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED Description:  Prolyl-tRNA synthetase (AHRD V1 **** Q7XZD2_RAPSA); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type
Genomic Order:  2841 Name:  ? Solyc01g096870.2
Secondary Identifier:  ? PAC:36139706
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g096870.2 0.5kb upstream 0.5kb upstream 6468 true SL2.50ch01: 87865744-87872211 Solanum lycopersicum
Solyc01g096870.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 87865744-87866243 Solanum lycopersicum
Solyc01g096870.2 0.5kb downstream 0.5kb downstream 6468 true SL2.50ch01: 87866244-87872711 Solanum lycopersicum
Solyc01g096870.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 87872212-87872711 Solanum lycopersicum
Solyc01g096870.2 1.0kb upstream 1.0kb upstream 6968 true SL2.50ch01: 87865244-87872211 Solanum lycopersicum
Solyc01g096870.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 87865244-87866243 Solanum lycopersicum
Solyc01g096870.2 1.0kb downstream 1.0kb downstream 6968 true SL2.50ch01: 87866244-87873211 Solanum lycopersicum
Solyc01g096870.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 87872212-87873211 Solanum lycopersicum
Solyc01g096870.2 2.0kb upstream 2.0kb upstream 7968 true SL2.50ch01: 87864244-87872211 Solanum lycopersicum
Solyc01g096870.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 87864244-87866243 Solanum lycopersicum
Solyc01g096870.2 2.0kb downstream 2.0kb downstream 7968 true SL2.50ch01: 87866244-87874211 Solanum lycopersicum
Solyc01g096870.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 87872212-87874211 Solanum lycopersicum
Solyc01g096870.2 5.0kb upstream 5.0kb upstream 10968 true SL2.50ch01: 87861244-87872211 Solanum lycopersicum
Solyc01g096870.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 87861244-87866243 Solanum lycopersicum
Solyc01g096870.2 5.0kb downstream 5.0kb downstream 10968 true SL2.50ch01: 87866244-87877211 Solanum lycopersicum
Solyc01g096870.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 87872212-87877211 Solanum lycopersicum
Solyc01g096870.2 10.0kb upstream 10.0kb upstream 15968 true SL2.50ch01: 87856244-87872211 Solanum lycopersicum
Solyc01g096870.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 87856244-87866243 Solanum lycopersicum
Solyc01g096870.2 10.0kb downstream 10.0kb downstream 15968 true SL2.50ch01: 87866244-87882211 Solanum lycopersicum
Solyc01g096870.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 87872212-87882211 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481090 5263 Asterids View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain