Gene : Solyc01g100540.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Description:  PAPA-1-like conserved region family protein expressed (AHRD V1 *-*- Q2QNL8_ORYSJ); contains Interpro domain(s) IPR006880 PAPA-1-like conserved region
Genomic Order:  3207 Name:  ? Solyc01g100540.2
Secondary Identifier:  ? PAC:36137150
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g100540.2 0.5kb upstream 0.5kb upstream 3900 true SL2.50ch01: 90548329-90552228 Solanum lycopersicum
Solyc01g100540.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 90551729-90552228 Solanum lycopersicum
Solyc01g100540.2 0.5kb downstream 0.5kb downstream 3900 true SL2.50ch01: 90547829-90551728 Solanum lycopersicum
Solyc01g100540.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 90547829-90548328 Solanum lycopersicum
Solyc01g100540.2 1.0kb upstream 1.0kb upstream 4400 true SL2.50ch01: 90548329-90552728 Solanum lycopersicum
Solyc01g100540.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 90551729-90552728 Solanum lycopersicum
Solyc01g100540.2 1.0kb downstream 1.0kb downstream 4400 true SL2.50ch01: 90547329-90551728 Solanum lycopersicum
Solyc01g100540.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 90547329-90548328 Solanum lycopersicum
Solyc01g100540.2 2.0kb upstream 2.0kb upstream 5400 true SL2.50ch01: 90548329-90553728 Solanum lycopersicum
Solyc01g100540.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 90551729-90553728 Solanum lycopersicum
Solyc01g100540.2 2.0kb downstream 2.0kb downstream 5400 true SL2.50ch01: 90546329-90551728 Solanum lycopersicum
Solyc01g100540.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 90546329-90548328 Solanum lycopersicum
Solyc01g100540.2 5.0kb upstream 5.0kb upstream 8400 true SL2.50ch01: 90548329-90556728 Solanum lycopersicum
Solyc01g100540.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 90551729-90556728 Solanum lycopersicum
Solyc01g100540.2 5.0kb downstream 5.0kb downstream 8400 true SL2.50ch01: 90543329-90551728 Solanum lycopersicum
Solyc01g100540.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 90543329-90548328 Solanum lycopersicum
Solyc01g100540.2 10.0kb upstream 10.0kb upstream 13400 true SL2.50ch01: 90548329-90561728 Solanum lycopersicum
Solyc01g100540.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 90551729-90561728 Solanum lycopersicum
Solyc01g100540.2 10.0kb downstream 10.0kb downstream 13400 true SL2.50ch01: 90538329-90551728 Solanum lycopersicum
Solyc01g100540.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 90538329-90548328 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041502 5273 Angiosperm View MSA
121476365 5263 Asterids View MSA
123742118 5271 Pentapetalae View MSA
122796664 5272 Eudicot View MSA
121348202 5274 Embryophyte View MSA
123380771 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain