Gene : Solyc01g100520.2 S. lycopersicum ITAG2.4

Defline:  (1 of 1) PTHR10381:SF12 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5, CHLOROPLASTIC Description:  ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- Q93YH0_SOLLC); contains Interpro domain(s) IPR018215 Peptidase S14, ClpP, active site
Genomic Order:  3205 Name:  ? Solyc01g100520.2
Secondary Identifier:  ? PAC:36138223

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g100520.2 0.5kb upstream 0.5kb upstream 5232 true SL2.50ch01: 90526868-90532099 Solanum lycopersicum
Solyc01g100520.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 90531600-90532099 Solanum lycopersicum
Solyc01g100520.2 0.5kb downstream 0.5kb downstream 5232 true SL2.50ch01: 90526368-90531599 Solanum lycopersicum
Solyc01g100520.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 90526368-90526867 Solanum lycopersicum
Solyc01g100520.2 1.0kb upstream 1.0kb upstream 5732 true SL2.50ch01: 90526868-90532599 Solanum lycopersicum
Solyc01g100520.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 90531600-90532599 Solanum lycopersicum
Solyc01g100520.2 1.0kb downstream 1.0kb downstream 5732 true SL2.50ch01: 90525868-90531599 Solanum lycopersicum
Solyc01g100520.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 90525868-90526867 Solanum lycopersicum
Solyc01g100520.2 2.0kb upstream 2.0kb upstream 6732 true SL2.50ch01: 90526868-90533599 Solanum lycopersicum
Solyc01g100520.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 90531600-90533599 Solanum lycopersicum
Solyc01g100520.2 2.0kb downstream 2.0kb downstream 6732 true SL2.50ch01: 90524868-90531599 Solanum lycopersicum
Solyc01g100520.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 90524868-90526867 Solanum lycopersicum
Solyc01g100520.2 5.0kb upstream 5.0kb upstream 9732 true SL2.50ch01: 90526868-90536599 Solanum lycopersicum
Solyc01g100520.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 90531600-90536599 Solanum lycopersicum
Solyc01g100520.2 5.0kb downstream 5.0kb downstream 9732 true SL2.50ch01: 90521868-90531599 Solanum lycopersicum
Solyc01g100520.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 90521868-90526867 Solanum lycopersicum
Solyc01g100520.2 10.0kb upstream 10.0kb upstream 14732 true SL2.50ch01: 90526868-90541599 Solanum lycopersicum
Solyc01g100520.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 90531600-90541599 Solanum lycopersicum
Solyc01g100520.2 10.0kb downstream 10.0kb downstream 14732 true SL2.50ch01: 90516868-90531599 Solanum lycopersicum
Solyc01g100520.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 90516868-90526867 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480057 5263 Asterids View MSA
123746339 5271 Pentapetalae View MSA
122771871 5272 Eudicot View MSA
122043333 5273 Angiosperm View MSA
121344238 5274 Embryophyte View MSA
123424888 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain