Gene : Solyc01g050040.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR22763:SF59 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MRP15 Description:  RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Genomic Order:  1187 Name:  ? Solyc01g050040.2
Secondary Identifier:  ? PAC:36139444
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g050040.2 0.5kb upstream 0.5kb upstream 1938 true SL2.50ch01: 48159860-48161797 Solanum lycopersicum
Solyc01g050040.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 48161298-48161797 Solanum lycopersicum
Solyc01g050040.2 0.5kb downstream 0.5kb downstream 1938 true SL2.50ch01: 48159360-48161297 Solanum lycopersicum
Solyc01g050040.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 48159360-48159859 Solanum lycopersicum
Solyc01g050040.2 1.0kb upstream 1.0kb upstream 2438 true SL2.50ch01: 48159860-48162297 Solanum lycopersicum
Solyc01g050040.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 48161298-48162297 Solanum lycopersicum
Solyc01g050040.2 1.0kb downstream 1.0kb downstream 2438 true SL2.50ch01: 48158860-48161297 Solanum lycopersicum
Solyc01g050040.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 48158860-48159859 Solanum lycopersicum
Solyc01g050040.2 2.0kb upstream 2.0kb upstream 3438 true SL2.50ch01: 48159860-48163297 Solanum lycopersicum
Solyc01g050040.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 48161298-48163297 Solanum lycopersicum
Solyc01g050040.2 2.0kb downstream 2.0kb downstream 3438 true SL2.50ch01: 48157860-48161297 Solanum lycopersicum
Solyc01g050040.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 48157860-48159859 Solanum lycopersicum
Solyc01g050040.2 5.0kb upstream 5.0kb upstream 6438 true SL2.50ch01: 48159860-48166297 Solanum lycopersicum
Solyc01g050040.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 48161298-48166297 Solanum lycopersicum
Solyc01g050040.2 5.0kb downstream 5.0kb downstream 6438 true SL2.50ch01: 48154860-48161297 Solanum lycopersicum
Solyc01g050040.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 48154860-48159859 Solanum lycopersicum
Solyc01g050040.2 10.0kb upstream 10.0kb upstream 11438 true SL2.50ch01: 48159860-48171297 Solanum lycopersicum
Solyc01g050040.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 48161298-48171297 Solanum lycopersicum
Solyc01g050040.2 10.0kb downstream 10.0kb downstream 11438 true SL2.50ch01: 48149860-48161297 Solanum lycopersicum
Solyc01g050040.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 48149860-48159859 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480845 5263 Asterids View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain