Gene : Solyc01g007910.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Description:  Succinyl-CoA ligase (AHRD V1 ***- B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit
Genomic Order:  292 Name:  ? Solyc01g007910.2
Secondary Identifier:  ? PAC:36137882
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-5464 Solanum lycopersicum pathologic  
Slycopersicum PWY-5690 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g007910.2 0.5kb upstream 0.5kb upstream 8269 true SL2.50ch01: 2104467-2112735 Solanum lycopersicum
Solyc01g007910.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 2104467-2104966 Solanum lycopersicum
Solyc01g007910.2 0.5kb downstream 0.5kb downstream 8269 true SL2.50ch01: 2104967-2113235 Solanum lycopersicum
Solyc01g007910.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 2112736-2113235 Solanum lycopersicum
Solyc01g007910.2 1.0kb upstream 1.0kb upstream 8769 true SL2.50ch01: 2103967-2112735 Solanum lycopersicum
Solyc01g007910.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 2103967-2104966 Solanum lycopersicum
Solyc01g007910.2 1.0kb downstream 1.0kb downstream 8769 true SL2.50ch01: 2104967-2113735 Solanum lycopersicum
Solyc01g007910.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 2112736-2113735 Solanum lycopersicum
Solyc01g007910.2 2.0kb upstream 2.0kb upstream 9769 true SL2.50ch01: 2102967-2112735 Solanum lycopersicum
Solyc01g007910.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 2102967-2104966 Solanum lycopersicum
Solyc01g007910.2 2.0kb downstream 2.0kb downstream 9769 true SL2.50ch01: 2104967-2114735 Solanum lycopersicum
Solyc01g007910.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 2112736-2114735 Solanum lycopersicum
Solyc01g007910.2 5.0kb upstream 5.0kb upstream 12769 true SL2.50ch01: 2099967-2112735 Solanum lycopersicum
Solyc01g007910.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 2099967-2104966 Solanum lycopersicum
Solyc01g007910.2 5.0kb downstream 5.0kb downstream 12769 true SL2.50ch01: 2104967-2117735 Solanum lycopersicum
Solyc01g007910.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 2112736-2117735 Solanum lycopersicum
Solyc01g007910.2 10.0kb upstream 10.0kb upstream 17769 true SL2.50ch01: 2094967-2112735 Solanum lycopersicum
Solyc01g007910.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 2094967-2104966 Solanum lycopersicum
Solyc01g007910.2 10.0kb downstream 10.0kb downstream 17769 true SL2.50ch01: 2104967-2122735 Solanum lycopersicum
Solyc01g007910.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 2112736-2122735 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469276 5263 Asterids View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain