Gene : Solyc01g079090.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 1.3.3.4 - Protoporphyrinogen oxidase / Protoporphyrinogenase Description:  Protoporphyrinogen oxidase (AHRD V1 ***- O64384_SOLTU); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase
Genomic Order:  1824 Name:  ? Solyc01g079090.2
Secondary Identifier:  ? PAC:36138075
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CHLOROPHYLL-SYN Solanum lycopersicum pathologic  
Slycopersicum HEME-BIOSYNTHESIS-II Solanum lycopersicum pathologic  
Slycopersicum PWY-5918 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g079090.2 0.5kb upstream 0.5kb upstream 5956 true SL2.50ch01: 78156875-78162830 Solanum lycopersicum
Solyc01g079090.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 78156875-78157374 Solanum lycopersicum
Solyc01g079090.2 0.5kb downstream 0.5kb downstream 5956 true SL2.50ch01: 78157375-78163330 Solanum lycopersicum
Solyc01g079090.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 78162831-78163330 Solanum lycopersicum
Solyc01g079090.2 1.0kb upstream 1.0kb upstream 6456 true SL2.50ch01: 78156375-78162830 Solanum lycopersicum
Solyc01g079090.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 78156375-78157374 Solanum lycopersicum
Solyc01g079090.2 1.0kb downstream 1.0kb downstream 6456 true SL2.50ch01: 78157375-78163830 Solanum lycopersicum
Solyc01g079090.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 78162831-78163830 Solanum lycopersicum
Solyc01g079090.2 2.0kb upstream 2.0kb upstream 7456 true SL2.50ch01: 78155375-78162830 Solanum lycopersicum
Solyc01g079090.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 78155375-78157374 Solanum lycopersicum
Solyc01g079090.2 2.0kb downstream 2.0kb downstream 7456 true SL2.50ch01: 78157375-78164830 Solanum lycopersicum
Solyc01g079090.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 78162831-78164830 Solanum lycopersicum
Solyc01g079090.2 5.0kb upstream 5.0kb upstream 10456 true SL2.50ch01: 78152375-78162830 Solanum lycopersicum
Solyc01g079090.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 78152375-78157374 Solanum lycopersicum
Solyc01g079090.2 5.0kb downstream 5.0kb downstream 10456 true SL2.50ch01: 78157375-78167830 Solanum lycopersicum
Solyc01g079090.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 78162831-78167830 Solanum lycopersicum
Solyc01g079090.2 10.0kb upstream 10.0kb upstream 15456 true SL2.50ch01: 78147375-78162830 Solanum lycopersicum
Solyc01g079090.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 78147375-78157374 Solanum lycopersicum
Solyc01g079090.2 10.0kb downstream 10.0kb downstream 15456 true SL2.50ch01: 78157375-78172830 Solanum lycopersicum
Solyc01g079090.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 78162831-78172830 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476380 5263 Asterids View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain