Gene : Solyc01g067890.2 S. lycopersicum ITAG2.4
Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Description:  1-deoxy-D-xylulose 5-phosphate synthase 1 (AHRD V1 ***- C7U110_SOLLC); contains Interpro domain(s) IPR005474 Transketolase, N-terminal IPR005475 Transketolase, central region IPR005477 Deoxyxylulose-5-phosphate synthase
Genomic Order:  1748 Name:  ? Solyc01g067890.2
Secondary Identifier:  ? PAC:36140897
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7560 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g067890.2 0.5kb upstream 0.5kb upstream 4792 true SL2.50ch01: 76868469-76873260 Solanum lycopersicum
Solyc01g067890.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 76872761-76873260 Solanum lycopersicum
Solyc01g067890.2 0.5kb downstream 0.5kb downstream 4792 true SL2.50ch01: 76867969-76872760 Solanum lycopersicum
Solyc01g067890.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 76867969-76868468 Solanum lycopersicum
Solyc01g067890.2 1.0kb upstream 1.0kb upstream 5292 true SL2.50ch01: 76868469-76873760 Solanum lycopersicum
Solyc01g067890.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 76872761-76873760 Solanum lycopersicum
Solyc01g067890.2 1.0kb downstream 1.0kb downstream 5292 true SL2.50ch01: 76867469-76872760 Solanum lycopersicum
Solyc01g067890.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 76867469-76868468 Solanum lycopersicum
Solyc01g067890.2 2.0kb upstream 2.0kb upstream 6292 true SL2.50ch01: 76868469-76874760 Solanum lycopersicum
Solyc01g067890.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 76872761-76874760 Solanum lycopersicum
Solyc01g067890.2 2.0kb downstream 2.0kb downstream 6292 true SL2.50ch01: 76866469-76872760 Solanum lycopersicum
Solyc01g067890.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 76866469-76868468 Solanum lycopersicum
Solyc01g067890.2 5.0kb upstream 5.0kb upstream 9292 true SL2.50ch01: 76868469-76877760 Solanum lycopersicum
Solyc01g067890.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 76872761-76877760 Solanum lycopersicum
Solyc01g067890.2 5.0kb downstream 5.0kb downstream 9292 true SL2.50ch01: 76863469-76872760 Solanum lycopersicum
Solyc01g067890.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 76863469-76868468 Solanum lycopersicum
Solyc01g067890.2 10.0kb upstream 10.0kb upstream 14292 true SL2.50ch01: 76868469-76882760 Solanum lycopersicum
Solyc01g067890.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 76872761-76882760 Solanum lycopersicum
Solyc01g067890.2 10.0kb downstream 10.0kb downstream 14292 true SL2.50ch01: 76858469-76872760 Solanum lycopersicum
Solyc01g067890.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 76858469-76868468 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472797 5263 Asterids View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain