Gene : Solyc01g080720.2 S. lycopersicum ITAG2.4
Defline:  (1 of 27) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1987 Name:  ? Solyc01g080720.2
Secondary Identifier:  ? PAC:36138282
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g080720.2 0.5kb upstream 0.5kb upstream 5671 true SL2.50ch01: 79958154-79963824 Solanum lycopersicum
Solyc01g080720.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 79958154-79958653 Solanum lycopersicum
Solyc01g080720.2 0.5kb downstream 0.5kb downstream 5671 true SL2.50ch01: 79958654-79964324 Solanum lycopersicum
Solyc01g080720.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 79963825-79964324 Solanum lycopersicum
Solyc01g080720.2 1.0kb upstream 1.0kb upstream 6171 true SL2.50ch01: 79957654-79963824 Solanum lycopersicum
Solyc01g080720.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 79957654-79958653 Solanum lycopersicum
Solyc01g080720.2 1.0kb downstream 1.0kb downstream 6171 true SL2.50ch01: 79958654-79964824 Solanum lycopersicum
Solyc01g080720.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 79963825-79964824 Solanum lycopersicum
Solyc01g080720.2 2.0kb upstream 2.0kb upstream 7171 true SL2.50ch01: 79956654-79963824 Solanum lycopersicum
Solyc01g080720.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 79956654-79958653 Solanum lycopersicum
Solyc01g080720.2 2.0kb downstream 2.0kb downstream 7171 true SL2.50ch01: 79958654-79965824 Solanum lycopersicum
Solyc01g080720.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 79963825-79965824 Solanum lycopersicum
Solyc01g080720.2 5.0kb upstream 5.0kb upstream 10171 true SL2.50ch01: 79953654-79963824 Solanum lycopersicum
Solyc01g080720.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 79953654-79958653 Solanum lycopersicum
Solyc01g080720.2 5.0kb downstream 5.0kb downstream 10171 true SL2.50ch01: 79958654-79968824 Solanum lycopersicum
Solyc01g080720.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 79963825-79968824 Solanum lycopersicum
Solyc01g080720.2 10.0kb upstream 10.0kb upstream 15171 true SL2.50ch01: 79948654-79963824 Solanum lycopersicum
Solyc01g080720.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 79948654-79958653 Solanum lycopersicum
Solyc01g080720.2 10.0kb downstream 10.0kb downstream 15171 true SL2.50ch01: 79958654-79973824 Solanum lycopersicum
Solyc01g080720.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 79963825-79973824 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466377 5263 Asterids View MSA
123736468 5271 Pentapetalae View MSA
122787025 5272 Eudicot View MSA
122042185 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain