Gene : Solyc01g106080.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Description:  Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase
Genomic Order:  3658 Name:  ? Solyc01g106080.2
Secondary Identifier:  ? PAC:36141315
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum VALDEG-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g106080.2 0.5kb upstream 0.5kb upstream 6371 true SL2.50ch01: 94064519-94070889 Solanum lycopersicum
Solyc01g106080.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 94070390-94070889 Solanum lycopersicum
Solyc01g106080.2 0.5kb downstream 0.5kb downstream 6371 true SL2.50ch01: 94064019-94070389 Solanum lycopersicum
Solyc01g106080.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 94064019-94064518 Solanum lycopersicum
Solyc01g106080.2 1.0kb upstream 1.0kb upstream 6871 true SL2.50ch01: 94064519-94071389 Solanum lycopersicum
Solyc01g106080.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 94070390-94071389 Solanum lycopersicum
Solyc01g106080.2 1.0kb downstream 1.0kb downstream 6871 true SL2.50ch01: 94063519-94070389 Solanum lycopersicum
Solyc01g106080.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 94063519-94064518 Solanum lycopersicum
Solyc01g106080.2 2.0kb upstream 2.0kb upstream 7871 true SL2.50ch01: 94064519-94072389 Solanum lycopersicum
Solyc01g106080.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 94070390-94072389 Solanum lycopersicum
Solyc01g106080.2 2.0kb downstream 2.0kb downstream 7871 true SL2.50ch01: 94062519-94070389 Solanum lycopersicum
Solyc01g106080.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 94062519-94064518 Solanum lycopersicum
Solyc01g106080.2 5.0kb upstream 5.0kb upstream 10871 true SL2.50ch01: 94064519-94075389 Solanum lycopersicum
Solyc01g106080.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 94070390-94075389 Solanum lycopersicum
Solyc01g106080.2 5.0kb downstream 5.0kb downstream 10871 true SL2.50ch01: 94059519-94070389 Solanum lycopersicum
Solyc01g106080.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 94059519-94064518 Solanum lycopersicum
Solyc01g106080.2 10.0kb upstream 10.0kb upstream 15871 true SL2.50ch01: 94064519-94080389 Solanum lycopersicum
Solyc01g106080.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 94070390-94080389 Solanum lycopersicum
Solyc01g106080.2 10.0kb downstream 10.0kb downstream 15871 true SL2.50ch01: 94054519-94070389 Solanum lycopersicum
Solyc01g106080.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 94054519-94064518 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471345 5263 Asterids View MSA
123738991 5271 Pentapetalae View MSA
122791664 5272 Eudicot View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain