Gene : Solyc10g050160.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR10509//PTHR10509:SF23 - O-METHYLTRANSFERASE-RELATED // SUBFAMILY NOT NAMED Description:  Caffeoyl-CoA 3-O-methyltransferase (AHRD V1 **** A6XBP7_BRARP); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3
Genomic Order:  1247 Name:  ? Solyc10g050160.1
Secondary Identifier:  ? PAC:36155841
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1121 Solanum lycopersicum pathologic  
Slycopersicum PWY-361 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g050160.1 0.5kb upstream 0.5kb upstream 3673 true SL2.50ch10: 48046590-48050262 Solanum lycopersicum
Solyc10g050160.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 48049763-48050262 Solanum lycopersicum
Solyc10g050160.1 0.5kb downstream 0.5kb downstream 3673 true SL2.50ch10: 48046090-48049762 Solanum lycopersicum
Solyc10g050160.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 48046090-48046589 Solanum lycopersicum
Solyc10g050160.1 1.0kb upstream 1.0kb upstream 4173 true SL2.50ch10: 48046590-48050762 Solanum lycopersicum
Solyc10g050160.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 48049763-48050762 Solanum lycopersicum
Solyc10g050160.1 1.0kb downstream 1.0kb downstream 4173 true SL2.50ch10: 48045590-48049762 Solanum lycopersicum
Solyc10g050160.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 48045590-48046589 Solanum lycopersicum
Solyc10g050160.1 2.0kb upstream 2.0kb upstream 5173 true SL2.50ch10: 48046590-48051762 Solanum lycopersicum
Solyc10g050160.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 48049763-48051762 Solanum lycopersicum
Solyc10g050160.1 2.0kb downstream 2.0kb downstream 5173 true SL2.50ch10: 48044590-48049762 Solanum lycopersicum
Solyc10g050160.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 48044590-48046589 Solanum lycopersicum
Solyc10g050160.1 5.0kb upstream 5.0kb upstream 8173 true SL2.50ch10: 48046590-48054762 Solanum lycopersicum
Solyc10g050160.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 48049763-48054762 Solanum lycopersicum
Solyc10g050160.1 5.0kb downstream 5.0kb downstream 8173 true SL2.50ch10: 48041590-48049762 Solanum lycopersicum
Solyc10g050160.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 48041590-48046589 Solanum lycopersicum
Solyc10g050160.1 10.0kb upstream 10.0kb upstream 13173 true SL2.50ch10: 48046590-48059762 Solanum lycopersicum
Solyc10g050160.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 48049763-48059762 Solanum lycopersicum
Solyc10g050160.1 10.0kb downstream 10.0kb downstream 13173 true SL2.50ch10: 48036590-48049762 Solanum lycopersicum
Solyc10g050160.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 48036590-48046589 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121386345 5263 Asterids View MSA
123746911 5271 Pentapetalae View MSA
122790683 5272 Eudicot View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain