Gene : Solyc10g044450.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Description:  Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3
Genomic Order:  894 Name:  ? Solyc10g044450.1
Secondary Identifier:  ? PAC:36155360
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g044450.1 0.5kb upstream 0.5kb upstream 15535 true SL2.50ch10: 26412342-26427876 Solanum lycopersicum
Solyc10g044450.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 26412342-26412841 Solanum lycopersicum
Solyc10g044450.1 0.5kb downstream 0.5kb downstream 15535 true SL2.50ch10: 26412842-26428376 Solanum lycopersicum
Solyc10g044450.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 26427877-26428376 Solanum lycopersicum
Solyc10g044450.1 1.0kb upstream 1.0kb upstream 16035 true SL2.50ch10: 26411842-26427876 Solanum lycopersicum
Solyc10g044450.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 26411842-26412841 Solanum lycopersicum
Solyc10g044450.1 1.0kb downstream 1.0kb downstream 16035 true SL2.50ch10: 26412842-26428876 Solanum lycopersicum
Solyc10g044450.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 26427877-26428876 Solanum lycopersicum
Solyc10g044450.1 2.0kb upstream 2.0kb upstream 17035 true SL2.50ch10: 26410842-26427876 Solanum lycopersicum
Solyc10g044450.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 26410842-26412841 Solanum lycopersicum
Solyc10g044450.1 2.0kb downstream 2.0kb downstream 17035 true SL2.50ch10: 26412842-26429876 Solanum lycopersicum
Solyc10g044450.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 26427877-26429876 Solanum lycopersicum
Solyc10g044450.1 5.0kb upstream 5.0kb upstream 20035 true SL2.50ch10: 26407842-26427876 Solanum lycopersicum
Solyc10g044450.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 26407842-26412841 Solanum lycopersicum
Solyc10g044450.1 5.0kb downstream 5.0kb downstream 20035 true SL2.50ch10: 26412842-26432876 Solanum lycopersicum
Solyc10g044450.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 26427877-26432876 Solanum lycopersicum
Solyc10g044450.1 10.0kb upstream 10.0kb upstream 25035 true SL2.50ch10: 26402842-26427876 Solanum lycopersicum
Solyc10g044450.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 26402842-26412841 Solanum lycopersicum
Solyc10g044450.1 10.0kb downstream 10.0kb downstream 25035 true SL2.50ch10: 26412842-26437876 Solanum lycopersicum
Solyc10g044450.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 26427877-26437876 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
121482914 5263 Asterids View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain