Gene : Solyc10g018390.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) KOG1395 - Tryptophan synthase beta chain Description:  Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain
Genomic Order:  635 Name:  ? Solyc10g018390.1
Secondary Identifier:  ? PAC:36154980
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRPSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g018390.1 0.5kb upstream 0.5kb upstream 5364 true SL2.50ch10: 7729852-7735215 Solanum lycopersicum
Solyc10g018390.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 7734716-7735215 Solanum lycopersicum
Solyc10g018390.1 0.5kb downstream 0.5kb downstream 5364 true SL2.50ch10: 7729352-7734715 Solanum lycopersicum
Solyc10g018390.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 7729352-7729851 Solanum lycopersicum
Solyc10g018390.1 1.0kb upstream 1.0kb upstream 5864 true SL2.50ch10: 7729852-7735715 Solanum lycopersicum
Solyc10g018390.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 7734716-7735715 Solanum lycopersicum
Solyc10g018390.1 1.0kb downstream 1.0kb downstream 5864 true SL2.50ch10: 7728852-7734715 Solanum lycopersicum
Solyc10g018390.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 7728852-7729851 Solanum lycopersicum
Solyc10g018390.1 2.0kb upstream 2.0kb upstream 6864 true SL2.50ch10: 7729852-7736715 Solanum lycopersicum
Solyc10g018390.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 7734716-7736715 Solanum lycopersicum
Solyc10g018390.1 2.0kb downstream 2.0kb downstream 6864 true SL2.50ch10: 7727852-7734715 Solanum lycopersicum
Solyc10g018390.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 7727852-7729851 Solanum lycopersicum
Solyc10g018390.1 5.0kb upstream 5.0kb upstream 9864 true SL2.50ch10: 7729852-7739715 Solanum lycopersicum
Solyc10g018390.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 7734716-7739715 Solanum lycopersicum
Solyc10g018390.1 5.0kb downstream 5.0kb downstream 9864 true SL2.50ch10: 7724852-7734715 Solanum lycopersicum
Solyc10g018390.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 7724852-7729851 Solanum lycopersicum
Solyc10g018390.1 10.0kb upstream 10.0kb upstream 14864 true SL2.50ch10: 7729852-7744715 Solanum lycopersicum
Solyc10g018390.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 7734716-7744715 Solanum lycopersicum
Solyc10g018390.1 10.0kb downstream 10.0kb downstream 14864 true SL2.50ch10: 7719852-7734715 Solanum lycopersicum
Solyc10g018390.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 7719852-7729851 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121414757 5263 Asterids View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain