Gene : Solyc01g112080.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR33734:SF5 - LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 Description:  LysM-domain GPI-anchored protein (AHRD V1 **-- Q4VVD8_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup
Genomic Order:  4255 Name:  ? Solyc01g112080.2
Secondary Identifier:  ? PAC:36137133
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g112080.2 0.5kb upstream 0.5kb upstream 2222 true SL2.50ch01: 98190036-98192257 Solanum lycopersicum
Solyc01g112080.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 98190036-98190535 Solanum lycopersicum
Solyc01g112080.2 0.5kb downstream 0.5kb downstream 2222 true SL2.50ch01: 98190536-98192757 Solanum lycopersicum
Solyc01g112080.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 98192258-98192757 Solanum lycopersicum
Solyc01g112080.2 1.0kb upstream 1.0kb upstream 2722 true SL2.50ch01: 98189536-98192257 Solanum lycopersicum
Solyc01g112080.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 98189536-98190535 Solanum lycopersicum
Solyc01g112080.2 1.0kb downstream 1.0kb downstream 2722 true SL2.50ch01: 98190536-98193257 Solanum lycopersicum
Solyc01g112080.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 98192258-98193257 Solanum lycopersicum
Solyc01g112080.2 2.0kb upstream 2.0kb upstream 3722 true SL2.50ch01: 98188536-98192257 Solanum lycopersicum
Solyc01g112080.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 98188536-98190535 Solanum lycopersicum
Solyc01g112080.2 2.0kb downstream 2.0kb downstream 3722 true SL2.50ch01: 98190536-98194257 Solanum lycopersicum
Solyc01g112080.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 98192258-98194257 Solanum lycopersicum
Solyc01g112080.2 5.0kb upstream 5.0kb upstream 6722 true SL2.50ch01: 98185536-98192257 Solanum lycopersicum
Solyc01g112080.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 98185536-98190535 Solanum lycopersicum
Solyc01g112080.2 5.0kb downstream 5.0kb downstream 6722 true SL2.50ch01: 98190536-98197257 Solanum lycopersicum
Solyc01g112080.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 98192258-98197257 Solanum lycopersicum
Solyc01g112080.2 10.0kb upstream 10.0kb upstream 11722 true SL2.50ch01: 98180536-98192257 Solanum lycopersicum
Solyc01g112080.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 98180536-98190535 Solanum lycopersicum
Solyc01g112080.2 10.0kb downstream 10.0kb downstream 11722 true SL2.50ch01: 98190536-98202257 Solanum lycopersicum
Solyc01g112080.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 98192258-98202257 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041196 5273 Angiosperm View MSA
121473902 5263 Asterids View MSA
123740270 5271 Pentapetalae View MSA
122790310 5272 Eudicot View MSA
121350262 5274 Embryophyte View MSA
123381651 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain