Gene : Solyc01g111990.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Description:  Alanyl-tRNA synthetase (AHRD V1 **** Q9FFC7_ARATH); contains Interpro domain(s) IPR002318 Alanyl-tRNA synthetase, class IIc
Genomic Order:  4247 Name:  ? Solyc01g111990.2
Secondary Identifier:  ? PAC:36139296
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g111990.2 0.5kb upstream 0.5kb upstream 9417 true SL2.50ch01: 98123144-98132560 Solanum lycopersicum
Solyc01g111990.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 98123144-98123643 Solanum lycopersicum
Solyc01g111990.2 0.5kb downstream 0.5kb downstream 9417 true SL2.50ch01: 98123644-98133060 Solanum lycopersicum
Solyc01g111990.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 98132561-98133060 Solanum lycopersicum
Solyc01g111990.2 1.0kb upstream 1.0kb upstream 9917 true SL2.50ch01: 98122644-98132560 Solanum lycopersicum
Solyc01g111990.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 98122644-98123643 Solanum lycopersicum
Solyc01g111990.2 1.0kb downstream 1.0kb downstream 9917 true SL2.50ch01: 98123644-98133560 Solanum lycopersicum
Solyc01g111990.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 98132561-98133560 Solanum lycopersicum
Solyc01g111990.2 2.0kb upstream 2.0kb upstream 10917 true SL2.50ch01: 98121644-98132560 Solanum lycopersicum
Solyc01g111990.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 98121644-98123643 Solanum lycopersicum
Solyc01g111990.2 2.0kb downstream 2.0kb downstream 10917 true SL2.50ch01: 98123644-98134560 Solanum lycopersicum
Solyc01g111990.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 98132561-98134560 Solanum lycopersicum
Solyc01g111990.2 5.0kb upstream 5.0kb upstream 13917 true SL2.50ch01: 98118644-98132560 Solanum lycopersicum
Solyc01g111990.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 98118644-98123643 Solanum lycopersicum
Solyc01g111990.2 5.0kb downstream 5.0kb downstream 13917 true SL2.50ch01: 98123644-98137560 Solanum lycopersicum
Solyc01g111990.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 98132561-98137560 Solanum lycopersicum
Solyc01g111990.2 10.0kb upstream 10.0kb upstream 18917 true SL2.50ch01: 98113644-98132560 Solanum lycopersicum
Solyc01g111990.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 98113644-98123643 Solanum lycopersicum
Solyc01g111990.2 10.0kb downstream 10.0kb downstream 18917 true SL2.50ch01: 98123644-98142560 Solanum lycopersicum
Solyc01g111990.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 98132561-98142560 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474940 5263 Asterids View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain