Gene : Solyc01g112290.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Description:  Glutamyl-tRNA synthetase (AHRD V1 ***- Q52JJ5_NICBE); contains Interpro domain(s) IPR004527 Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial
Genomic Order:  4276 Name:  ? Solyc01g112290.2
Secondary Identifier:  ? PAC:36138747
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-5188 Solanum lycopersicum pathologic  
Slycopersicum PWY-5918 Solanum lycopersicum pathologic  
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g112290.2 0.5kb upstream 0.5kb upstream 15774 true SL2.50ch01: 98352967-98368740 Solanum lycopersicum
Solyc01g112290.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 98352967-98353466 Solanum lycopersicum
Solyc01g112290.2 0.5kb downstream 0.5kb downstream 15774 true SL2.50ch01: 98353467-98369240 Solanum lycopersicum
Solyc01g112290.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 98368741-98369240 Solanum lycopersicum
Solyc01g112290.2 1.0kb upstream 1.0kb upstream 16274 true SL2.50ch01: 98352467-98368740 Solanum lycopersicum
Solyc01g112290.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 98352467-98353466 Solanum lycopersicum
Solyc01g112290.2 1.0kb downstream 1.0kb downstream 16274 true SL2.50ch01: 98353467-98369740 Solanum lycopersicum
Solyc01g112290.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 98368741-98369740 Solanum lycopersicum
Solyc01g112290.2 2.0kb upstream 2.0kb upstream 17274 true SL2.50ch01: 98351467-98368740 Solanum lycopersicum
Solyc01g112290.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 98351467-98353466 Solanum lycopersicum
Solyc01g112290.2 2.0kb downstream 2.0kb downstream 17274 true SL2.50ch01: 98353467-98370740 Solanum lycopersicum
Solyc01g112290.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 98368741-98370740 Solanum lycopersicum
Solyc01g112290.2 5.0kb upstream 5.0kb upstream 20274 true SL2.50ch01: 98348467-98368740 Solanum lycopersicum
Solyc01g112290.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 98348467-98353466 Solanum lycopersicum
Solyc01g112290.2 5.0kb downstream 5.0kb downstream 20274 true SL2.50ch01: 98353467-98373740 Solanum lycopersicum
Solyc01g112290.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 98368741-98373740 Solanum lycopersicum
Solyc01g112290.2 10.0kb upstream 10.0kb upstream 25274 true SL2.50ch01: 98343467-98368740 Solanum lycopersicum
Solyc01g112290.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 98343467-98353466 Solanum lycopersicum
Solyc01g112290.2 10.0kb downstream 10.0kb downstream 25274 true SL2.50ch01: 98353467-98378740 Solanum lycopersicum
Solyc01g112290.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 98368741-98378740 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467935 5263 Asterids View MSA
123737264 5271 Pentapetalae View MSA
122787973 5272 Eudicot View MSA
122041760 5273 Angiosperm View MSA
121345245 5274 Embryophyte View MSA
123424323 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain