Gene : Solyc04g009620.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Description:  Chorismate synthase (AHRD V1 **** A5APN1_VITVI); contains Interpro domain(s) IPR000453 Chorismate synthase
Genomic Order:  363 Name:  ? Solyc04g009620.2
Secondary Identifier:  ? PAC:36141484
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ARO-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-6163 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g009620.2 0.5kb upstream 0.5kb upstream 8654 true SL2.50ch04: 2998013-3006666 Solanum lycopersicum
Solyc04g009620.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 3006167-3006666 Solanum lycopersicum
Solyc04g009620.2 0.5kb downstream 0.5kb downstream 8654 true SL2.50ch04: 2997513-3006166 Solanum lycopersicum
Solyc04g009620.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 2997513-2998012 Solanum lycopersicum
Solyc04g009620.2 1.0kb upstream 1.0kb upstream 9154 true SL2.50ch04: 2998013-3007166 Solanum lycopersicum
Solyc04g009620.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 3006167-3007166 Solanum lycopersicum
Solyc04g009620.2 1.0kb downstream 1.0kb downstream 9154 true SL2.50ch04: 2997013-3006166 Solanum lycopersicum
Solyc04g009620.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 2997013-2998012 Solanum lycopersicum
Solyc04g009620.2 2.0kb upstream 2.0kb upstream 10154 true SL2.50ch04: 2998013-3008166 Solanum lycopersicum
Solyc04g009620.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 3006167-3008166 Solanum lycopersicum
Solyc04g009620.2 2.0kb downstream 2.0kb downstream 10154 true SL2.50ch04: 2996013-3006166 Solanum lycopersicum
Solyc04g009620.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 2996013-2998012 Solanum lycopersicum
Solyc04g009620.2 5.0kb upstream 5.0kb upstream 13154 true SL2.50ch04: 2998013-3011166 Solanum lycopersicum
Solyc04g009620.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 3006167-3011166 Solanum lycopersicum
Solyc04g009620.2 5.0kb downstream 5.0kb downstream 13154 true SL2.50ch04: 2993013-3006166 Solanum lycopersicum
Solyc04g009620.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 2993013-2998012 Solanum lycopersicum
Solyc04g009620.2 10.0kb upstream 10.0kb upstream 18154 true SL2.50ch04: 2998013-3016166 Solanum lycopersicum
Solyc04g009620.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 3006167-3016166 Solanum lycopersicum
Solyc04g009620.2 10.0kb downstream 10.0kb downstream 18154 true SL2.50ch04: 2988013-3006166 Solanum lycopersicum
Solyc04g009620.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 2988013-2998012 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
121389159 5263 Asterids View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain