Gene : Solyc04g008540.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR31142:SF3 - PROTEIN TOM THREE HOMOLOG 1-RELATED Description:  Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084
Genomic Order:  255 Name:  ? Solyc04g008540.2
Secondary Identifier:  ? PAC:36142531
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g008540.2 0.5kb upstream 0.5kb upstream 7542 true SL2.50ch04: 2157991-2165532 Solanum lycopersicum
Solyc04g008540.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 2165033-2165532 Solanum lycopersicum
Solyc04g008540.2 0.5kb downstream 0.5kb downstream 7542 true SL2.50ch04: 2157491-2165032 Solanum lycopersicum
Solyc04g008540.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 2157491-2157990 Solanum lycopersicum
Solyc04g008540.2 1.0kb upstream 1.0kb upstream 8042 true SL2.50ch04: 2157991-2166032 Solanum lycopersicum
Solyc04g008540.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 2165033-2166032 Solanum lycopersicum
Solyc04g008540.2 1.0kb downstream 1.0kb downstream 8042 true SL2.50ch04: 2156991-2165032 Solanum lycopersicum
Solyc04g008540.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 2156991-2157990 Solanum lycopersicum
Solyc04g008540.2 2.0kb upstream 2.0kb upstream 9042 true SL2.50ch04: 2157991-2167032 Solanum lycopersicum
Solyc04g008540.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 2165033-2167032 Solanum lycopersicum
Solyc04g008540.2 2.0kb downstream 2.0kb downstream 9042 true SL2.50ch04: 2155991-2165032 Solanum lycopersicum
Solyc04g008540.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 2155991-2157990 Solanum lycopersicum
Solyc04g008540.2 5.0kb upstream 5.0kb upstream 12042 true SL2.50ch04: 2157991-2170032 Solanum lycopersicum
Solyc04g008540.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 2165033-2170032 Solanum lycopersicum
Solyc04g008540.2 5.0kb downstream 5.0kb downstream 12042 true SL2.50ch04: 2152991-2165032 Solanum lycopersicum
Solyc04g008540.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 2152991-2157990 Solanum lycopersicum
Solyc04g008540.2 10.0kb upstream 10.0kb upstream 17042 true SL2.50ch04: 2157991-2175032 Solanum lycopersicum
Solyc04g008540.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 2165033-2175032 Solanum lycopersicum
Solyc04g008540.2 10.0kb downstream 10.0kb downstream 17042 true SL2.50ch04: 2147991-2165032 Solanum lycopersicum
Solyc04g008540.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 2147991-2157990 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467340 5263 Asterids View MSA
123753465 5271 Pentapetalae View MSA
122796045 5272 Eudicot View MSA
122049721 5273 Angiosperm View MSA
121345693 5274 Embryophyte View MSA
123426001 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain