Gene : Solyc10g080210.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Description:  Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
Genomic Order:  1990 Name:  ? Solyc10g080210.1
Secondary Identifier:  ? PAC:36154480
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1081 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g080210.1 0.5kb upstream 0.5kb upstream 7136 true SL2.50ch10: 61559168-61566303 Solanum lycopersicum
Solyc10g080210.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 61565804-61566303 Solanum lycopersicum
Solyc10g080210.1 0.5kb downstream 0.5kb downstream 7136 true SL2.50ch10: 61558668-61565803 Solanum lycopersicum
Solyc10g080210.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 61558668-61559167 Solanum lycopersicum
Solyc10g080210.1 1.0kb upstream 1.0kb upstream 7636 true SL2.50ch10: 61559168-61566803 Solanum lycopersicum
Solyc10g080210.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 61565804-61566803 Solanum lycopersicum
Solyc10g080210.1 1.0kb downstream 1.0kb downstream 7636 true SL2.50ch10: 61558168-61565803 Solanum lycopersicum
Solyc10g080210.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 61558168-61559167 Solanum lycopersicum
Solyc10g080210.1 2.0kb upstream 2.0kb upstream 8636 true SL2.50ch10: 61559168-61567803 Solanum lycopersicum
Solyc10g080210.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 61565804-61567803 Solanum lycopersicum
Solyc10g080210.1 2.0kb downstream 2.0kb downstream 8636 true SL2.50ch10: 61557168-61565803 Solanum lycopersicum
Solyc10g080210.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 61557168-61559167 Solanum lycopersicum
Solyc10g080210.1 5.0kb upstream 5.0kb upstream 11636 true SL2.50ch10: 61559168-61570803 Solanum lycopersicum
Solyc10g080210.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 61565804-61570803 Solanum lycopersicum
Solyc10g080210.1 5.0kb downstream 5.0kb downstream 11636 true SL2.50ch10: 61554168-61565803 Solanum lycopersicum
Solyc10g080210.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 61554168-61559167 Solanum lycopersicum
Solyc10g080210.1 10.0kb upstream 10.0kb upstream 16636 true SL2.50ch10: 61559168-61575803 Solanum lycopersicum
Solyc10g080210.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 61565804-61575803 Solanum lycopersicum
Solyc10g080210.1 10.0kb downstream 10.0kb downstream 16636 true SL2.50ch10: 61549168-61565803 Solanum lycopersicum
Solyc10g080210.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 61549168-61559167 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477959 5263 Asterids View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain