Gene : Solyc10g079990.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR11618//PTHR11618:SF25 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED // SUBFAMILY NOT NAMED Description:  Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related
Genomic Order:  1968 Name:  ? Solyc10g079990.1
Secondary Identifier:  ? PAC:36155722
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g079990.1 0.5kb upstream 0.5kb upstream 1804 true SL2.50ch10: 61418998-61420801 Solanum lycopersicum
Solyc10g079990.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 61420302-61420801 Solanum lycopersicum
Solyc10g079990.1 0.5kb downstream 0.5kb downstream 1804 true SL2.50ch10: 61418498-61420301 Solanum lycopersicum
Solyc10g079990.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 61418498-61418997 Solanum lycopersicum
Solyc10g079990.1 1.0kb upstream 1.0kb upstream 2304 true SL2.50ch10: 61418998-61421301 Solanum lycopersicum
Solyc10g079990.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 61420302-61421301 Solanum lycopersicum
Solyc10g079990.1 1.0kb downstream 1.0kb downstream 2304 true SL2.50ch10: 61417998-61420301 Solanum lycopersicum
Solyc10g079990.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 61417998-61418997 Solanum lycopersicum
Solyc10g079990.1 2.0kb upstream 2.0kb upstream 3304 true SL2.50ch10: 61418998-61422301 Solanum lycopersicum
Solyc10g079990.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 61420302-61422301 Solanum lycopersicum
Solyc10g079990.1 2.0kb downstream 2.0kb downstream 3304 true SL2.50ch10: 61416998-61420301 Solanum lycopersicum
Solyc10g079990.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 61416998-61418997 Solanum lycopersicum
Solyc10g079990.1 5.0kb upstream 5.0kb upstream 6304 true SL2.50ch10: 61418998-61425301 Solanum lycopersicum
Solyc10g079990.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 61420302-61425301 Solanum lycopersicum
Solyc10g079990.1 5.0kb downstream 5.0kb downstream 6304 true SL2.50ch10: 61413998-61420301 Solanum lycopersicum
Solyc10g079990.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 61413998-61418997 Solanum lycopersicum
Solyc10g079990.1 10.0kb upstream 10.0kb upstream 11304 true SL2.50ch10: 61418998-61430301 Solanum lycopersicum
Solyc10g079990.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 61420302-61430301 Solanum lycopersicum
Solyc10g079990.1 10.0kb downstream 10.0kb downstream 11304 true SL2.50ch10: 61408998-61420301 Solanum lycopersicum
Solyc10g079990.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 61408998-61418997 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121370957 5263 Asterids Singleton cluster - no MSA
123751611 5271 Pentapetalae View MSA
122797589 5272 Eudicot View MSA
122045994 5273 Angiosperm View MSA
121350308 5274 Embryophyte View MSA
123427568 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain