Gene : Solyc10g078320.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR23077:SF27 - SPERMATOGENESIS-ASSOCIATED PROTEIN 5 Description:  AAA family ATPase CDC48 subfamily (AHRD V1 *--- D7D9J0_STAHD); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core
Genomic Order:  1801 Name:  ? Solyc10g078320.1
Secondary Identifier:  ? PAC:36154662
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g078320.1 0.5kb upstream 0.5kb upstream 8242 true SL2.50ch10: 60143745-60151986 Solanum lycopersicum
Solyc10g078320.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 60151487-60151986 Solanum lycopersicum
Solyc10g078320.1 0.5kb downstream 0.5kb downstream 8242 true SL2.50ch10: 60143245-60151486 Solanum lycopersicum
Solyc10g078320.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 60143245-60143744 Solanum lycopersicum
Solyc10g078320.1 1.0kb upstream 1.0kb upstream 8742 true SL2.50ch10: 60143745-60152486 Solanum lycopersicum
Solyc10g078320.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 60151487-60152486 Solanum lycopersicum
Solyc10g078320.1 1.0kb downstream 1.0kb downstream 8742 true SL2.50ch10: 60142745-60151486 Solanum lycopersicum
Solyc10g078320.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 60142745-60143744 Solanum lycopersicum
Solyc10g078320.1 2.0kb upstream 2.0kb upstream 9742 true SL2.50ch10: 60143745-60153486 Solanum lycopersicum
Solyc10g078320.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 60151487-60153486 Solanum lycopersicum
Solyc10g078320.1 2.0kb downstream 2.0kb downstream 9742 true SL2.50ch10: 60141745-60151486 Solanum lycopersicum
Solyc10g078320.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 60141745-60143744 Solanum lycopersicum
Solyc10g078320.1 5.0kb upstream 5.0kb upstream 12742 true SL2.50ch10: 60143745-60156486 Solanum lycopersicum
Solyc10g078320.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 60151487-60156486 Solanum lycopersicum
Solyc10g078320.1 5.0kb downstream 5.0kb downstream 12742 true SL2.50ch10: 60138745-60151486 Solanum lycopersicum
Solyc10g078320.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 60138745-60143744 Solanum lycopersicum
Solyc10g078320.1 10.0kb upstream 10.0kb upstream 17742 true SL2.50ch10: 60143745-60161486 Solanum lycopersicum
Solyc10g078320.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 60151487-60161486 Solanum lycopersicum
Solyc10g078320.1 10.0kb downstream 10.0kb downstream 17742 true SL2.50ch10: 60133745-60151486 Solanum lycopersicum
Solyc10g078320.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 60133745-60143744 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472785 5263 Asterids View MSA
123737682 5271 Pentapetalae View MSA
122793147 5272 Eudicot View MSA
122041889 5273 Angiosperm View MSA
121345411 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain