Gene : Solyc04g057940.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR22849//PTHR22849:SF31 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Description:  U-box domain-containing protein (AHRD V1 *-*- B6V8G2_HELAN); contains Interpro domain(s) IPR017986 WD40 repeat, region
Genomic Order:  1641 Name:  ? Solyc04g057940.2
Secondary Identifier:  ? PAC:36143571
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g057940.2 0.5kb upstream 0.5kb upstream 6667 true SL2.50ch04: 55053798-55060464 Solanum lycopersicum
Solyc04g057940.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 55053798-55054297 Solanum lycopersicum
Solyc04g057940.2 0.5kb downstream 0.5kb downstream 6667 true SL2.50ch04: 55054298-55060964 Solanum lycopersicum
Solyc04g057940.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 55060465-55060964 Solanum lycopersicum
Solyc04g057940.2 1.0kb upstream 1.0kb upstream 7167 true SL2.50ch04: 55053298-55060464 Solanum lycopersicum
Solyc04g057940.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 55053298-55054297 Solanum lycopersicum
Solyc04g057940.2 1.0kb downstream 1.0kb downstream 7167 true SL2.50ch04: 55054298-55061464 Solanum lycopersicum
Solyc04g057940.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 55060465-55061464 Solanum lycopersicum
Solyc04g057940.2 2.0kb upstream 2.0kb upstream 8167 true SL2.50ch04: 55052298-55060464 Solanum lycopersicum
Solyc04g057940.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 55052298-55054297 Solanum lycopersicum
Solyc04g057940.2 2.0kb downstream 2.0kb downstream 8167 true SL2.50ch04: 55054298-55062464 Solanum lycopersicum
Solyc04g057940.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 55060465-55062464 Solanum lycopersicum
Solyc04g057940.2 5.0kb upstream 5.0kb upstream 11167 true SL2.50ch04: 55049298-55060464 Solanum lycopersicum
Solyc04g057940.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 55049298-55054297 Solanum lycopersicum
Solyc04g057940.2 5.0kb downstream 5.0kb downstream 11167 true SL2.50ch04: 55054298-55065464 Solanum lycopersicum
Solyc04g057940.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 55060465-55065464 Solanum lycopersicum
Solyc04g057940.2 10.0kb upstream 10.0kb upstream 16167 true SL2.50ch04: 55044298-55060464 Solanum lycopersicum
Solyc04g057940.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 55044298-55054297 Solanum lycopersicum
Solyc04g057940.2 10.0kb downstream 10.0kb downstream 16167 true SL2.50ch04: 55054298-55070464 Solanum lycopersicum
Solyc04g057940.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 55060465-55070464 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121468371 5263 Asterids View MSA
123741699 5271 Pentapetalae View MSA
122795332 5272 Eudicot View MSA
122049229 5273 Angiosperm View MSA
121348338 5274 Embryophyte View MSA
123380824 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain