Gene : Solyc04g054410.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR12460:SF4 - ENTH/VHS FAMILY PROTEIN Description:  Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618
Genomic Order:  1498 Name:  ? Solyc04g054410.2
Secondary Identifier:  ? PAC:36141868
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g054410.2 0.5kb upstream 0.5kb upstream 6528 true SL2.50ch04: 52477042-52483569 Solanum lycopersicum
Solyc04g054410.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 52483070-52483569 Solanum lycopersicum
Solyc04g054410.2 0.5kb downstream 0.5kb downstream 6528 true SL2.50ch04: 52476542-52483069 Solanum lycopersicum
Solyc04g054410.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 52476542-52477041 Solanum lycopersicum
Solyc04g054410.2 1.0kb upstream 1.0kb upstream 7028 true SL2.50ch04: 52477042-52484069 Solanum lycopersicum
Solyc04g054410.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 52483070-52484069 Solanum lycopersicum
Solyc04g054410.2 1.0kb downstream 1.0kb downstream 7028 true SL2.50ch04: 52476042-52483069 Solanum lycopersicum
Solyc04g054410.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 52476042-52477041 Solanum lycopersicum
Solyc04g054410.2 2.0kb upstream 2.0kb upstream 8028 true SL2.50ch04: 52477042-52485069 Solanum lycopersicum
Solyc04g054410.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 52483070-52485069 Solanum lycopersicum
Solyc04g054410.2 2.0kb downstream 2.0kb downstream 8028 true SL2.50ch04: 52475042-52483069 Solanum lycopersicum
Solyc04g054410.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 52475042-52477041 Solanum lycopersicum
Solyc04g054410.2 5.0kb upstream 5.0kb upstream 11028 true SL2.50ch04: 52477042-52488069 Solanum lycopersicum
Solyc04g054410.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 52483070-52488069 Solanum lycopersicum
Solyc04g054410.2 5.0kb downstream 5.0kb downstream 11028 true SL2.50ch04: 52472042-52483069 Solanum lycopersicum
Solyc04g054410.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 52472042-52477041 Solanum lycopersicum
Solyc04g054410.2 10.0kb upstream 10.0kb upstream 16028 true SL2.50ch04: 52477042-52493069 Solanum lycopersicum
Solyc04g054410.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 52483070-52493069 Solanum lycopersicum
Solyc04g054410.2 10.0kb downstream 10.0kb downstream 16028 true SL2.50ch04: 52467042-52483069 Solanum lycopersicum
Solyc04g054410.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 52467042-52477041 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469812 5263 Asterids View MSA
123742286 5271 Pentapetalae View MSA
122795416 5272 Eudicot View MSA
122049571 5273 Angiosperm View MSA
123428880 5275 Viridiplantae View MSA
121348039 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain