Gene : Solyc04g050780.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR23315:SF75 - U-BOX DOMAIN-CONTAINING PROTEIN 9 Description:  U-box domain-containing protein (AHRD V1 **-- A8IXJ0_BRACM); contains Interpro domain(s) IPR011989 Armadillo-like helical
Genomic Order:  1342 Name:  ? Solyc04g050780.1
Secondary Identifier:  ? PAC:36142851
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g050780.1 0.5kb upstream 0.5kb upstream 1857 true SL2.50ch04: 48258554-48260410 Solanum lycopersicum
Solyc04g050780.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 48258554-48259053 Solanum lycopersicum
Solyc04g050780.1 0.5kb downstream 0.5kb downstream 1857 true SL2.50ch04: 48259054-48260910 Solanum lycopersicum
Solyc04g050780.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 48260411-48260910 Solanum lycopersicum
Solyc04g050780.1 1.0kb upstream 1.0kb upstream 2357 true SL2.50ch04: 48258054-48260410 Solanum lycopersicum
Solyc04g050780.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 48258054-48259053 Solanum lycopersicum
Solyc04g050780.1 1.0kb downstream 1.0kb downstream 2357 true SL2.50ch04: 48259054-48261410 Solanum lycopersicum
Solyc04g050780.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 48260411-48261410 Solanum lycopersicum
Solyc04g050780.1 2.0kb upstream 2.0kb upstream 3357 true SL2.50ch04: 48257054-48260410 Solanum lycopersicum
Solyc04g050780.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 48257054-48259053 Solanum lycopersicum
Solyc04g050780.1 2.0kb downstream 2.0kb downstream 3357 true SL2.50ch04: 48259054-48262410 Solanum lycopersicum
Solyc04g050780.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 48260411-48262410 Solanum lycopersicum
Solyc04g050780.1 5.0kb upstream 5.0kb upstream 6357 true SL2.50ch04: 48254054-48260410 Solanum lycopersicum
Solyc04g050780.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 48254054-48259053 Solanum lycopersicum
Solyc04g050780.1 5.0kb downstream 5.0kb downstream 6357 true SL2.50ch04: 48259054-48265410 Solanum lycopersicum
Solyc04g050780.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 48260411-48265410 Solanum lycopersicum
Solyc04g050780.1 10.0kb upstream 10.0kb upstream 11357 true SL2.50ch04: 48249054-48260410 Solanum lycopersicum
Solyc04g050780.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 48249054-48259053 Solanum lycopersicum
Solyc04g050780.1 10.0kb downstream 10.0kb downstream 11357 true SL2.50ch04: 48259054-48270410 Solanum lycopersicum
Solyc04g050780.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 48260411-48270410 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029179 5273 Angiosperm View MSA
121482646 5263 Asterids View MSA
123745896 5271 Pentapetalae View MSA
122785914 5272 Eudicot View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain