Gene : Solyc04g050670.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Description:  Cycloartenol synthase (AHRD V1 ***- Q9SXV6_GLYGL); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
Genomic Order:  1331 Name:  ? Solyc04g050670.1
Secondary Identifier:  ? PAC:36143687
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-2541 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g050670.1 0.5kb upstream 0.5kb upstream 2154 true SL2.50ch04: 47999376-48001529 Solanum lycopersicum
Solyc04g050670.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 48001030-48001529 Solanum lycopersicum
Solyc04g050670.1 0.5kb downstream 0.5kb downstream 2154 true SL2.50ch04: 47998876-48001029 Solanum lycopersicum
Solyc04g050670.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 47998876-47999375 Solanum lycopersicum
Solyc04g050670.1 1.0kb upstream 1.0kb upstream 2654 true SL2.50ch04: 47999376-48002029 Solanum lycopersicum
Solyc04g050670.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 48001030-48002029 Solanum lycopersicum
Solyc04g050670.1 1.0kb downstream 1.0kb downstream 2654 true SL2.50ch04: 47998376-48001029 Solanum lycopersicum
Solyc04g050670.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 47998376-47999375 Solanum lycopersicum
Solyc04g050670.1 2.0kb upstream 2.0kb upstream 3654 true SL2.50ch04: 47999376-48003029 Solanum lycopersicum
Solyc04g050670.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 48001030-48003029 Solanum lycopersicum
Solyc04g050670.1 2.0kb downstream 2.0kb downstream 3654 true SL2.50ch04: 47997376-48001029 Solanum lycopersicum
Solyc04g050670.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 47997376-47999375 Solanum lycopersicum
Solyc04g050670.1 5.0kb upstream 5.0kb upstream 6654 true SL2.50ch04: 47999376-48006029 Solanum lycopersicum
Solyc04g050670.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 48001030-48006029 Solanum lycopersicum
Solyc04g050670.1 5.0kb downstream 5.0kb downstream 6654 true SL2.50ch04: 47994376-48001029 Solanum lycopersicum
Solyc04g050670.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 47994376-47999375 Solanum lycopersicum
Solyc04g050670.1 10.0kb upstream 10.0kb upstream 11654 true SL2.50ch04: 47999376-48011029 Solanum lycopersicum
Solyc04g050670.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 48001030-48011029 Solanum lycopersicum
Solyc04g050670.1 10.0kb downstream 10.0kb downstream 11654 true SL2.50ch04: 47989376-48001029 Solanum lycopersicum
Solyc04g050670.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 47989376-47999375 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029665 5273 Angiosperm View MSA
121367260 5263 Asterids Singleton cluster - no MSA
123650718 5271 Pentapetalae Singleton cluster - no MSA
122684648 5272 Eudicot Singleton cluster - no MSA
121298968 5274 Embryophyte View MSA
123336900 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain