Gene : Solyc04g015530.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Description:  Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28
Genomic Order:  652 Name:  ? Solyc04g015530.1
Secondary Identifier:  ? PAC:36141848
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1081 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g015530.1 0.5kb upstream 0.5kb upstream 8089 true SL2.50ch04: 5756103-5764191 Solanum lycopersicum
Solyc04g015530.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 5756103-5756602 Solanum lycopersicum
Solyc04g015530.1 0.5kb downstream 0.5kb downstream 8089 true SL2.50ch04: 5756603-5764691 Solanum lycopersicum
Solyc04g015530.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 5764192-5764691 Solanum lycopersicum
Solyc04g015530.1 1.0kb upstream 1.0kb upstream 8589 true SL2.50ch04: 5755603-5764191 Solanum lycopersicum
Solyc04g015530.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 5755603-5756602 Solanum lycopersicum
Solyc04g015530.1 1.0kb downstream 1.0kb downstream 8589 true SL2.50ch04: 5756603-5765191 Solanum lycopersicum
Solyc04g015530.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 5764192-5765191 Solanum lycopersicum
Solyc04g015530.1 2.0kb upstream 2.0kb upstream 9589 true SL2.50ch04: 5754603-5764191 Solanum lycopersicum
Solyc04g015530.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 5754603-5756602 Solanum lycopersicum
Solyc04g015530.1 2.0kb downstream 2.0kb downstream 9589 true SL2.50ch04: 5756603-5766191 Solanum lycopersicum
Solyc04g015530.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 5764192-5766191 Solanum lycopersicum
Solyc04g015530.1 5.0kb upstream 5.0kb upstream 12589 true SL2.50ch04: 5751603-5764191 Solanum lycopersicum
Solyc04g015530.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 5751603-5756602 Solanum lycopersicum
Solyc04g015530.1 5.0kb downstream 5.0kb downstream 12589 true SL2.50ch04: 5756603-5769191 Solanum lycopersicum
Solyc04g015530.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 5764192-5769191 Solanum lycopersicum
Solyc04g015530.1 10.0kb upstream 10.0kb upstream 17589 true SL2.50ch04: 5746603-5764191 Solanum lycopersicum
Solyc04g015530.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 5746603-5756602 Solanum lycopersicum
Solyc04g015530.1 10.0kb downstream 10.0kb downstream 17589 true SL2.50ch04: 5756603-5774191 Solanum lycopersicum
Solyc04g015530.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 5764192-5774191 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477959 5263 Asterids View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain