Gene : Solyc04g025340.1 S. lycopersicum ITAG2.4
Defline:  (1 of 58) PF05970 - PIF1-like helicase (PIF1) Description:  Helitron helicase-like protein (AHRD V1 ***- D0NDZ2_PHYIN); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote
Genomic Order:  1013 Name:  ? Solyc04g025340.1
Secondary Identifier:  ? PAC:36144040
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g025340.1 0.5kb upstream 0.5kb upstream 899 true SL2.50ch04: 24173245-24174143 Solanum lycopersicum
Solyc04g025340.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 24173245-24173744 Solanum lycopersicum
Solyc04g025340.1 0.5kb downstream 0.5kb downstream 899 true SL2.50ch04: 24173745-24174643 Solanum lycopersicum
Solyc04g025340.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 24174144-24174643 Solanum lycopersicum
Solyc04g025340.1 1.0kb upstream 1.0kb upstream 1399 true SL2.50ch04: 24172745-24174143 Solanum lycopersicum
Solyc04g025340.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 24172745-24173744 Solanum lycopersicum
Solyc04g025340.1 1.0kb downstream 1.0kb downstream 1399 true SL2.50ch04: 24173745-24175143 Solanum lycopersicum
Solyc04g025340.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 24174144-24175143 Solanum lycopersicum
Solyc04g025340.1 2.0kb upstream 2.0kb upstream 2399 true SL2.50ch04: 24171745-24174143 Solanum lycopersicum
Solyc04g025340.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 24171745-24173744 Solanum lycopersicum
Solyc04g025340.1 2.0kb downstream 2.0kb downstream 2399 true SL2.50ch04: 24173745-24176143 Solanum lycopersicum
Solyc04g025340.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 24174144-24176143 Solanum lycopersicum
Solyc04g025340.1 5.0kb upstream 5.0kb upstream 5399 true SL2.50ch04: 24168745-24174143 Solanum lycopersicum
Solyc04g025340.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 24168745-24173744 Solanum lycopersicum
Solyc04g025340.1 5.0kb downstream 5.0kb downstream 5399 true SL2.50ch04: 24173745-24179143 Solanum lycopersicum
Solyc04g025340.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 24174144-24179143 Solanum lycopersicum
Solyc04g025340.1 10.0kb upstream 10.0kb upstream 10399 true SL2.50ch04: 24163745-24174143 Solanum lycopersicum
Solyc04g025340.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 24163745-24173744 Solanum lycopersicum
Solyc04g025340.1 10.0kb downstream 10.0kb downstream 10399 true SL2.50ch04: 24173745-24184143 Solanum lycopersicum
Solyc04g025340.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 24174144-24184143 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
121367351 5263 Asterids Singleton cluster - no MSA
123750876 5271 Pentapetalae View MSA
122797633 5272 Eudicot View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain