Gene : Solyc12g019290.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) KOG4422 - Uncharacterized conserved protein Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJQ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  822 Name:  ? Solyc12g019290.1
Secondary Identifier:  ? PAC:36148749
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g019290.1 0.5kb upstream 0.5kb upstream 2696 true SL2.50ch12: 9915270-9917965 Solanum lycopersicum
Solyc12g019290.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 9915270-9915769 Solanum lycopersicum
Solyc12g019290.1 0.5kb downstream 0.5kb downstream 2696 true SL2.50ch12: 9915770-9918465 Solanum lycopersicum
Solyc12g019290.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 9917966-9918465 Solanum lycopersicum
Solyc12g019290.1 1.0kb upstream 1.0kb upstream 3196 true SL2.50ch12: 9914770-9917965 Solanum lycopersicum
Solyc12g019290.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 9914770-9915769 Solanum lycopersicum
Solyc12g019290.1 1.0kb downstream 1.0kb downstream 3196 true SL2.50ch12: 9915770-9918965 Solanum lycopersicum
Solyc12g019290.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 9917966-9918965 Solanum lycopersicum
Solyc12g019290.1 2.0kb upstream 2.0kb upstream 4196 true SL2.50ch12: 9913770-9917965 Solanum lycopersicum
Solyc12g019290.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 9913770-9915769 Solanum lycopersicum
Solyc12g019290.1 2.0kb downstream 2.0kb downstream 4196 true SL2.50ch12: 9915770-9919965 Solanum lycopersicum
Solyc12g019290.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 9917966-9919965 Solanum lycopersicum
Solyc12g019290.1 5.0kb upstream 5.0kb upstream 7196 true SL2.50ch12: 9910770-9917965 Solanum lycopersicum
Solyc12g019290.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 9910770-9915769 Solanum lycopersicum
Solyc12g019290.1 5.0kb downstream 5.0kb downstream 7196 true SL2.50ch12: 9915770-9922965 Solanum lycopersicum
Solyc12g019290.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 9917966-9922965 Solanum lycopersicum
Solyc12g019290.1 10.0kb upstream 10.0kb upstream 12196 true SL2.50ch12: 9905770-9917965 Solanum lycopersicum
Solyc12g019290.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 9905770-9915769 Solanum lycopersicum
Solyc12g019290.1 10.0kb downstream 10.0kb downstream 12196 true SL2.50ch12: 9915770-9927965 Solanum lycopersicum
Solyc12g019290.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 9917966-9927965 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474585 5263 Asterids View MSA
123740629 5271 Pentapetalae View MSA
122786381 5272 Eudicot View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain