Gene : Solyc12g019180.1 S. lycopersicum ITAG2.4
Defline:  (1 of 4) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Description:  Polygalacturonase 7 (AHRD V1 ***- Q9ZT65_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28
Genomic Order:  812 Name:  ? Solyc12g019180.1
Secondary Identifier:  ? PAC:36147322
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1081 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g019180.1 0.5kb upstream 0.5kb upstream 2351 true SL2.50ch12: 9459617-9461967 Solanum lycopersicum
Solyc12g019180.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 9461468-9461967 Solanum lycopersicum
Solyc12g019180.1 0.5kb downstream 0.5kb downstream 2351 true SL2.50ch12: 9459117-9461467 Solanum lycopersicum
Solyc12g019180.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 9459117-9459616 Solanum lycopersicum
Solyc12g019180.1 1.0kb upstream 1.0kb upstream 2851 true SL2.50ch12: 9459617-9462467 Solanum lycopersicum
Solyc12g019180.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 9461468-9462467 Solanum lycopersicum
Solyc12g019180.1 1.0kb downstream 1.0kb downstream 2851 true SL2.50ch12: 9458617-9461467 Solanum lycopersicum
Solyc12g019180.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 9458617-9459616 Solanum lycopersicum
Solyc12g019180.1 2.0kb upstream 2.0kb upstream 3851 true SL2.50ch12: 9459617-9463467 Solanum lycopersicum
Solyc12g019180.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 9461468-9463467 Solanum lycopersicum
Solyc12g019180.1 2.0kb downstream 2.0kb downstream 3851 true SL2.50ch12: 9457617-9461467 Solanum lycopersicum
Solyc12g019180.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 9457617-9459616 Solanum lycopersicum
Solyc12g019180.1 5.0kb upstream 5.0kb upstream 6851 true SL2.50ch12: 9459617-9466467 Solanum lycopersicum
Solyc12g019180.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 9461468-9466467 Solanum lycopersicum
Solyc12g019180.1 5.0kb downstream 5.0kb downstream 6851 true SL2.50ch12: 9454617-9461467 Solanum lycopersicum
Solyc12g019180.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 9454617-9459616 Solanum lycopersicum
Solyc12g019180.1 10.0kb upstream 10.0kb upstream 11851 true SL2.50ch12: 9459617-9471467 Solanum lycopersicum
Solyc12g019180.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 9461468-9471467 Solanum lycopersicum
Solyc12g019180.1 10.0kb downstream 10.0kb downstream 11851 true SL2.50ch12: 9449617-9461467 Solanum lycopersicum
Solyc12g019180.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 9449617-9459616 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469641 5263 Asterids View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain