Gene : Solyc12g019110.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K01873 - valyl-tRNA synthetase (VARS, valS) Description:  Valyl-tRNA synthetase (AHRD V1 ***- B9LKX4_CHLSY); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia
Genomic Order:  805 Name:  ? Solyc12g019110.1
Secondary Identifier:  ? PAC:36147665
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g019110.1 0.5kb upstream 0.5kb upstream 22085 true SL2.50ch12: 9128186-9150270 Solanum lycopersicum
Solyc12g019110.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 9128186-9128685 Solanum lycopersicum
Solyc12g019110.1 0.5kb downstream 0.5kb downstream 22085 true SL2.50ch12: 9128686-9150770 Solanum lycopersicum
Solyc12g019110.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 9150271-9150770 Solanum lycopersicum
Solyc12g019110.1 1.0kb upstream 1.0kb upstream 22585 true SL2.50ch12: 9127686-9150270 Solanum lycopersicum
Solyc12g019110.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 9127686-9128685 Solanum lycopersicum
Solyc12g019110.1 1.0kb downstream 1.0kb downstream 22585 true SL2.50ch12: 9128686-9151270 Solanum lycopersicum
Solyc12g019110.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 9150271-9151270 Solanum lycopersicum
Solyc12g019110.1 2.0kb upstream 2.0kb upstream 23585 true SL2.50ch12: 9126686-9150270 Solanum lycopersicum
Solyc12g019110.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 9126686-9128685 Solanum lycopersicum
Solyc12g019110.1 2.0kb downstream 2.0kb downstream 23585 true SL2.50ch12: 9128686-9152270 Solanum lycopersicum
Solyc12g019110.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 9150271-9152270 Solanum lycopersicum
Solyc12g019110.1 5.0kb upstream 5.0kb upstream 26585 true SL2.50ch12: 9123686-9150270 Solanum lycopersicum
Solyc12g019110.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 9123686-9128685 Solanum lycopersicum
Solyc12g019110.1 5.0kb downstream 5.0kb downstream 26585 true SL2.50ch12: 9128686-9155270 Solanum lycopersicum
Solyc12g019110.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 9150271-9155270 Solanum lycopersicum
Solyc12g019110.1 10.0kb upstream 10.0kb upstream 31585 true SL2.50ch12: 9118686-9150270 Solanum lycopersicum
Solyc12g019110.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 9118686-9128685 Solanum lycopersicum
Solyc12g019110.1 10.0kb downstream 10.0kb downstream 31585 true SL2.50ch12: 9128686-9160270 Solanum lycopersicum
Solyc12g019110.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 9150271-9160270 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471651 5263 Asterids View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain