Gene : Solyc12g019000.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR22792//PTHR22792:SF65 - LUPUS LA PROTEIN-RELATED // SUBFAMILY NOT NAMED Description:  La-related protein 6 (AHRD V1 *--- LARP6_MOUSE); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La
Genomic Order:  795 Name:  ? Solyc12g019000.1
Secondary Identifier:  ? PAC:36148377
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g019000.1 0.5kb upstream 0.5kb upstream 12389 true SL2.50ch12: 8936330-8948718 Solanum lycopersicum
Solyc12g019000.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 8948219-8948718 Solanum lycopersicum
Solyc12g019000.1 0.5kb downstream 0.5kb downstream 12389 true SL2.50ch12: 8935830-8948218 Solanum lycopersicum
Solyc12g019000.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 8935830-8936329 Solanum lycopersicum
Solyc12g019000.1 1.0kb upstream 1.0kb upstream 12889 true SL2.50ch12: 8936330-8949218 Solanum lycopersicum
Solyc12g019000.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 8948219-8949218 Solanum lycopersicum
Solyc12g019000.1 1.0kb downstream 1.0kb downstream 12889 true SL2.50ch12: 8935330-8948218 Solanum lycopersicum
Solyc12g019000.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 8935330-8936329 Solanum lycopersicum
Solyc12g019000.1 2.0kb upstream 2.0kb upstream 13889 true SL2.50ch12: 8936330-8950218 Solanum lycopersicum
Solyc12g019000.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 8948219-8950218 Solanum lycopersicum
Solyc12g019000.1 2.0kb downstream 2.0kb downstream 13889 true SL2.50ch12: 8934330-8948218 Solanum lycopersicum
Solyc12g019000.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 8934330-8936329 Solanum lycopersicum
Solyc12g019000.1 5.0kb upstream 5.0kb upstream 16889 true SL2.50ch12: 8936330-8953218 Solanum lycopersicum
Solyc12g019000.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 8948219-8953218 Solanum lycopersicum
Solyc12g019000.1 5.0kb downstream 5.0kb downstream 16889 true SL2.50ch12: 8931330-8948218 Solanum lycopersicum
Solyc12g019000.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 8931330-8936329 Solanum lycopersicum
Solyc12g019000.1 10.0kb upstream 10.0kb upstream 21889 true SL2.50ch12: 8936330-8958218 Solanum lycopersicum
Solyc12g019000.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 8948219-8958218 Solanum lycopersicum
Solyc12g019000.1 10.0kb downstream 10.0kb downstream 21889 true SL2.50ch12: 8926330-8948218 Solanum lycopersicum
Solyc12g019000.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 8926330-8936329 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121414520 5263 Asterids View MSA
123744284 5271 Pentapetalae View MSA
122790327 5272 Eudicot View MSA
122051197 5273 Angiosperm View MSA
121349510 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain