Gene : Solyc12g009400.1 S. lycopersicum ITAG2.4
Defline:  (1 of 4) K00161 - pyruvate dehydrogenase E1 component alpha subunit (PDHA, pdhA) Description:  Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y
Genomic Order:  341 Name:  ? Solyc12g009400.1
Secondary Identifier:  ? PAC:36148667
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-5173 Solanum lycopersicum pathologic  
Slycopersicum PWY-5464 Solanum lycopersicum pathologic  
Slycopersicum PYRUVDEHYD-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g009400.1 0.5kb upstream 0.5kb upstream 4207 true SL2.50ch12: 2681710-2685916 Solanum lycopersicum
Solyc12g009400.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 2681710-2682209 Solanum lycopersicum
Solyc12g009400.1 0.5kb downstream 0.5kb downstream 4207 true SL2.50ch12: 2682210-2686416 Solanum lycopersicum
Solyc12g009400.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 2685917-2686416 Solanum lycopersicum
Solyc12g009400.1 1.0kb upstream 1.0kb upstream 4707 true SL2.50ch12: 2681210-2685916 Solanum lycopersicum
Solyc12g009400.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 2681210-2682209 Solanum lycopersicum
Solyc12g009400.1 1.0kb downstream 1.0kb downstream 4707 true SL2.50ch12: 2682210-2686916 Solanum lycopersicum
Solyc12g009400.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 2685917-2686916 Solanum lycopersicum
Solyc12g009400.1 2.0kb upstream 2.0kb upstream 5707 true SL2.50ch12: 2680210-2685916 Solanum lycopersicum
Solyc12g009400.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 2680210-2682209 Solanum lycopersicum
Solyc12g009400.1 2.0kb downstream 2.0kb downstream 5707 true SL2.50ch12: 2682210-2687916 Solanum lycopersicum
Solyc12g009400.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 2685917-2687916 Solanum lycopersicum
Solyc12g009400.1 5.0kb upstream 5.0kb upstream 8707 true SL2.50ch12: 2677210-2685916 Solanum lycopersicum
Solyc12g009400.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 2677210-2682209 Solanum lycopersicum
Solyc12g009400.1 5.0kb downstream 5.0kb downstream 8707 true SL2.50ch12: 2682210-2690916 Solanum lycopersicum
Solyc12g009400.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 2685917-2690916 Solanum lycopersicum
Solyc12g009400.1 10.0kb upstream 10.0kb upstream 13707 true SL2.50ch12: 2672210-2685916 Solanum lycopersicum
Solyc12g009400.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 2672210-2682209 Solanum lycopersicum
Solyc12g009400.1 10.0kb downstream 10.0kb downstream 13707 true SL2.50ch12: 2682210-2695916 Solanum lycopersicum
Solyc12g009400.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 2685917-2695916 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478825 5263 Asterids View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain