Gene : Solyc12g007170.1 S. lycopersicum ITAG2.4
Defline:  (1 of 5) 1.1.1.35//4.2.1.17//5.1.2.3//5.3.3.8 - 3-hydroxyacyl-CoA dehydrogenase / Beta-keto-reductase // Enoyl-CoA hydratase / Unsaturated acyl-CoA hydratase // 3-hydroxybutyryl-CoA epimerase // Dodecenoyl-CoA isomerase / Dodecenoyl-CoA Delta-isomerase Description:  Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding
Genomic Order:  217 Name:  ? Solyc12g007170.1
Secondary Identifier:  ? PAC:36147579
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Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ILEUDEG-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5136 Solanum lycopersicum pathologic  
Slycopersicum PWY-5137 Solanum lycopersicum pathologic  
Slycopersicum PWY-5138 Solanum lycopersicum pathologic  
Slycopersicum PWY-561 Solanum lycopersicum pathologic  
Slycopersicum PWY-6435 Solanum lycopersicum pathologic  
Slycopersicum PWY-6837 Solanum lycopersicum pathologic  
Slycopersicum PWY-7036 Solanum lycopersicum pathologic  
Slycopersicum PWY-735 Solanum lycopersicum pathologic  
Slycopersicum PWY-7606 Solanum lycopersicum pathologic  
Slycopersicum PWY-7726 Solanum lycopersicum pathologic  
Slycopersicum VALDEG-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g007170.1 0.5kb upstream 0.5kb upstream 10142 true SL2.50ch12: 1605039-1615180 Solanum lycopersicum
Solyc12g007170.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 1605039-1605538 Solanum lycopersicum
Solyc12g007170.1 0.5kb downstream 0.5kb downstream 10142 true SL2.50ch12: 1605539-1615680 Solanum lycopersicum
Solyc12g007170.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 1615181-1615680 Solanum lycopersicum
Solyc12g007170.1 1.0kb upstream 1.0kb upstream 10642 true SL2.50ch12: 1604539-1615180 Solanum lycopersicum
Solyc12g007170.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 1604539-1605538 Solanum lycopersicum
Solyc12g007170.1 1.0kb downstream 1.0kb downstream 10642 true SL2.50ch12: 1605539-1616180 Solanum lycopersicum
Solyc12g007170.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 1615181-1616180 Solanum lycopersicum
Solyc12g007170.1 2.0kb upstream 2.0kb upstream 11642 true SL2.50ch12: 1603539-1615180 Solanum lycopersicum
Solyc12g007170.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 1603539-1605538 Solanum lycopersicum
Solyc12g007170.1 2.0kb downstream 2.0kb downstream 11642 true SL2.50ch12: 1605539-1617180 Solanum lycopersicum
Solyc12g007170.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 1615181-1617180 Solanum lycopersicum
Solyc12g007170.1 5.0kb upstream 5.0kb upstream 14642 true SL2.50ch12: 1600539-1615180 Solanum lycopersicum
Solyc12g007170.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 1600539-1605538 Solanum lycopersicum
Solyc12g007170.1 5.0kb downstream 5.0kb downstream 14642 true SL2.50ch12: 1605539-1620180 Solanum lycopersicum
Solyc12g007170.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 1615181-1620180 Solanum lycopersicum
Solyc12g007170.1 10.0kb upstream 10.0kb upstream 19642 true SL2.50ch12: 1595539-1615180 Solanum lycopersicum
Solyc12g007170.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 1595539-1605538 Solanum lycopersicum
Solyc12g007170.1 10.0kb downstream 10.0kb downstream 19642 true SL2.50ch12: 1605539-1625180 Solanum lycopersicum
Solyc12g007170.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 1615181-1625180 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479633 5263 Asterids View MSA
123736586 5271 Pentapetalae View MSA
122787212 5272 Eudicot View MSA
122047578 5273 Angiosperm View MSA
121310763 5274 Embryophyte View MSA
123348170 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain