Gene : Solyc12g008860.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) KOG4452 - Predicted membrane protein Description:  Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007915 Uncharacterised protein family UPF0197
Genomic Order:  287 Name:  ? Solyc12g008860.1
Secondary Identifier:  ? PAC:36146719
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g008860.1 0.5kb upstream 0.5kb upstream 3147 true SL2.50ch12: 2195406-2198552 Solanum lycopersicum
Solyc12g008860.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 2198053-2198552 Solanum lycopersicum
Solyc12g008860.1 0.5kb downstream 0.5kb downstream 3147 true SL2.50ch12: 2194906-2198052 Solanum lycopersicum
Solyc12g008860.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 2194906-2195405 Solanum lycopersicum
Solyc12g008860.1 1.0kb upstream 1.0kb upstream 3647 true SL2.50ch12: 2195406-2199052 Solanum lycopersicum
Solyc12g008860.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 2198053-2199052 Solanum lycopersicum
Solyc12g008860.1 1.0kb downstream 1.0kb downstream 3647 true SL2.50ch12: 2194406-2198052 Solanum lycopersicum
Solyc12g008860.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 2194406-2195405 Solanum lycopersicum
Solyc12g008860.1 2.0kb upstream 2.0kb upstream 4647 true SL2.50ch12: 2195406-2200052 Solanum lycopersicum
Solyc12g008860.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 2198053-2200052 Solanum lycopersicum
Solyc12g008860.1 2.0kb downstream 2.0kb downstream 4647 true SL2.50ch12: 2193406-2198052 Solanum lycopersicum
Solyc12g008860.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 2193406-2195405 Solanum lycopersicum
Solyc12g008860.1 5.0kb upstream 5.0kb upstream 7647 true SL2.50ch12: 2195406-2203052 Solanum lycopersicum
Solyc12g008860.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 2198053-2203052 Solanum lycopersicum
Solyc12g008860.1 5.0kb downstream 5.0kb downstream 7647 true SL2.50ch12: 2190406-2198052 Solanum lycopersicum
Solyc12g008860.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 2190406-2195405 Solanum lycopersicum
Solyc12g008860.1 10.0kb upstream 10.0kb upstream 12647 true SL2.50ch12: 2195406-2208052 Solanum lycopersicum
Solyc12g008860.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 2198053-2208052 Solanum lycopersicum
Solyc12g008860.1 10.0kb downstream 10.0kb downstream 12647 true SL2.50ch12: 2185406-2198052 Solanum lycopersicum
Solyc12g008860.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 2185406-2195405 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121371776 5263 Asterids Singleton cluster - no MSA
123745362 5271 Pentapetalae View MSA
122797533 5272 Eudicot View MSA
122042429 5273 Angiosperm View MSA
121343951 5274 Embryophyte View MSA
123425665 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain