Gene : Solyc04g078300.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR11945//PTHR11945:SF200 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Description:  MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
Genomic Order:  2277 Name:  ? Solyc04g078300.2
Secondary Identifier:  ? PAC:36143488
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g078300.2 0.5kb upstream 0.5kb upstream 3936 true SL2.50ch04: 63057690-63061625 Solanum lycopersicum
Solyc04g078300.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 63057690-63058189 Solanum lycopersicum
Solyc04g078300.2 0.5kb downstream 0.5kb downstream 3936 true SL2.50ch04: 63058190-63062125 Solanum lycopersicum
Solyc04g078300.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 63061626-63062125 Solanum lycopersicum
Solyc04g078300.2 1.0kb upstream 1.0kb upstream 4436 true SL2.50ch04: 63057190-63061625 Solanum lycopersicum
Solyc04g078300.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 63057190-63058189 Solanum lycopersicum
Solyc04g078300.2 1.0kb downstream 1.0kb downstream 4436 true SL2.50ch04: 63058190-63062625 Solanum lycopersicum
Solyc04g078300.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 63061626-63062625 Solanum lycopersicum
Solyc04g078300.2 2.0kb upstream 2.0kb upstream 5436 true SL2.50ch04: 63056190-63061625 Solanum lycopersicum
Solyc04g078300.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 63056190-63058189 Solanum lycopersicum
Solyc04g078300.2 2.0kb downstream 2.0kb downstream 5436 true SL2.50ch04: 63058190-63063625 Solanum lycopersicum
Solyc04g078300.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 63061626-63063625 Solanum lycopersicum
Solyc04g078300.2 5.0kb upstream 5.0kb upstream 8436 true SL2.50ch04: 63053190-63061625 Solanum lycopersicum
Solyc04g078300.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 63053190-63058189 Solanum lycopersicum
Solyc04g078300.2 5.0kb downstream 5.0kb downstream 8436 true SL2.50ch04: 63058190-63066625 Solanum lycopersicum
Solyc04g078300.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 63061626-63066625 Solanum lycopersicum
Solyc04g078300.2 10.0kb upstream 10.0kb upstream 13436 true SL2.50ch04: 63048190-63061625 Solanum lycopersicum
Solyc04g078300.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 63048190-63058189 Solanum lycopersicum
Solyc04g078300.2 10.0kb downstream 10.0kb downstream 13436 true SL2.50ch04: 63058190-63071625 Solanum lycopersicum
Solyc04g078300.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 63061626-63071625 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473271 5263 Asterids View MSA
123753647 5271 Pentapetalae View MSA
122786853 5272 Eudicot View MSA
122050633 5273 Angiosperm View MSA
121350455 5274 Embryophyte View MSA
123427239 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain