Gene : Solyc04g079850.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PF01535//PF12315//PF12854//PF13041 - PPR repeat (PPR) // Protein of unknown function (DUF3633) (DUF3633) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHC1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2427 Name:  ? Solyc04g079850.1
Secondary Identifier:  ? PAC:36142371
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g079850.1 0.5kb upstream 0.5kb upstream 4227 true SL2.50ch04: 64165005-64169231 Solanum lycopersicum
Solyc04g079850.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 64165005-64165504 Solanum lycopersicum
Solyc04g079850.1 0.5kb downstream 0.5kb downstream 4227 true SL2.50ch04: 64165505-64169731 Solanum lycopersicum
Solyc04g079850.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 64169232-64169731 Solanum lycopersicum
Solyc04g079850.1 1.0kb upstream 1.0kb upstream 4727 true SL2.50ch04: 64164505-64169231 Solanum lycopersicum
Solyc04g079850.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 64164505-64165504 Solanum lycopersicum
Solyc04g079850.1 1.0kb downstream 1.0kb downstream 4727 true SL2.50ch04: 64165505-64170231 Solanum lycopersicum
Solyc04g079850.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 64169232-64170231 Solanum lycopersicum
Solyc04g079850.1 2.0kb upstream 2.0kb upstream 5727 true SL2.50ch04: 64163505-64169231 Solanum lycopersicum
Solyc04g079850.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 64163505-64165504 Solanum lycopersicum
Solyc04g079850.1 2.0kb downstream 2.0kb downstream 5727 true SL2.50ch04: 64165505-64171231 Solanum lycopersicum
Solyc04g079850.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 64169232-64171231 Solanum lycopersicum
Solyc04g079850.1 5.0kb upstream 5.0kb upstream 8727 true SL2.50ch04: 64160505-64169231 Solanum lycopersicum
Solyc04g079850.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 64160505-64165504 Solanum lycopersicum
Solyc04g079850.1 5.0kb downstream 5.0kb downstream 8727 true SL2.50ch04: 64165505-64174231 Solanum lycopersicum
Solyc04g079850.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 64169232-64174231 Solanum lycopersicum
Solyc04g079850.1 10.0kb upstream 10.0kb upstream 13727 true SL2.50ch04: 64155505-64169231 Solanum lycopersicum
Solyc04g079850.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 64155505-64165504 Solanum lycopersicum
Solyc04g079850.1 10.0kb downstream 10.0kb downstream 13727 true SL2.50ch04: 64165505-64179231 Solanum lycopersicum
Solyc04g079850.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 64169232-64179231 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474521 5263 Asterids View MSA
123745749 5271 Pentapetalae View MSA
122788083 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain