Gene : Solyc12g100000.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR23315:SF7 - U-BOX DOMAIN-CONTAINING PROTEIN 2-RELATED Description:  U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical
Genomic Order:  2444 Name:  ? Solyc12g100000.1
Secondary Identifier:  ? PAC:36147740
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g100000.1 0.5kb upstream 0.5kb upstream 3373 true SL2.50ch12: 66913693-66917065 Solanum lycopersicum
Solyc12g100000.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 66913693-66914192 Solanum lycopersicum
Solyc12g100000.1 0.5kb downstream 0.5kb downstream 3373 true SL2.50ch12: 66914193-66917565 Solanum lycopersicum
Solyc12g100000.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 66917066-66917565 Solanum lycopersicum
Solyc12g100000.1 1.0kb upstream 1.0kb upstream 3873 true SL2.50ch12: 66913193-66917065 Solanum lycopersicum
Solyc12g100000.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 66913193-66914192 Solanum lycopersicum
Solyc12g100000.1 1.0kb downstream 1.0kb downstream 3873 true SL2.50ch12: 66914193-66918065 Solanum lycopersicum
Solyc12g100000.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 66917066-66918065 Solanum lycopersicum
Solyc12g100000.1 2.0kb upstream 2.0kb upstream 4873 true SL2.50ch12: 66912193-66917065 Solanum lycopersicum
Solyc12g100000.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 66912193-66914192 Solanum lycopersicum
Solyc12g100000.1 2.0kb downstream 2.0kb downstream 4873 true SL2.50ch12: 66914193-66919065 Solanum lycopersicum
Solyc12g100000.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 66917066-66919065 Solanum lycopersicum
Solyc12g100000.1 5.0kb upstream 5.0kb upstream 7873 true SL2.50ch12: 66909193-66917065 Solanum lycopersicum
Solyc12g100000.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 66909193-66914192 Solanum lycopersicum
Solyc12g100000.1 5.0kb downstream 5.0kb downstream 7873 true SL2.50ch12: 66914193-66922065 Solanum lycopersicum
Solyc12g100000.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 66917066-66922065 Solanum lycopersicum
Solyc12g100000.1 10.0kb upstream 10.0kb upstream 12873 true SL2.50ch12: 66904193-66917065 Solanum lycopersicum
Solyc12g100000.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 66904193-66914192 Solanum lycopersicum
Solyc12g100000.1 10.0kb downstream 10.0kb downstream 12873 true SL2.50ch12: 66914193-66927065 Solanum lycopersicum
Solyc12g100000.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 66917066-66927065 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477382 5263 Asterids View MSA
123748124 5271 Pentapetalae View MSA
122789337 5272 Eudicot View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain