Gene : Solyc12g099440.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 4.2.1.55 - 3-hydroxybutyryl-CoA dehydratase / Crotonase Description:  Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding
Genomic Order:  2388 Name:  ? Solyc12g099440.1
Secondary Identifier:  ? PAC:36147284
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Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ILEUDEG-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5136 Solanum lycopersicum pathologic  
Slycopersicum PWY-5137 Solanum lycopersicum pathologic  
Slycopersicum PWY-5138 Solanum lycopersicum pathologic  
Slycopersicum PWY-561 Solanum lycopersicum pathologic  
Slycopersicum PWY-6435 Solanum lycopersicum pathologic  
Slycopersicum PWY-6837 Solanum lycopersicum pathologic  
Slycopersicum PWY-7036 Solanum lycopersicum pathologic  
Slycopersicum PWY-735 Solanum lycopersicum pathologic  
Slycopersicum PWY-7606 Solanum lycopersicum pathologic  
Slycopersicum PWY-7726 Solanum lycopersicum pathologic  
Slycopersicum VALDEG-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g099440.1 0.5kb upstream 0.5kb upstream 8179 true SL2.50ch12: 66590396-66598574 Solanum lycopersicum
Solyc12g099440.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 66590396-66590895 Solanum lycopersicum
Solyc12g099440.1 0.5kb downstream 0.5kb downstream 8179 true SL2.50ch12: 66590896-66599074 Solanum lycopersicum
Solyc12g099440.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 66598575-66599074 Solanum lycopersicum
Solyc12g099440.1 1.0kb upstream 1.0kb upstream 8679 true SL2.50ch12: 66589896-66598574 Solanum lycopersicum
Solyc12g099440.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 66589896-66590895 Solanum lycopersicum
Solyc12g099440.1 1.0kb downstream 1.0kb downstream 8679 true SL2.50ch12: 66590896-66599574 Solanum lycopersicum
Solyc12g099440.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 66598575-66599574 Solanum lycopersicum
Solyc12g099440.1 2.0kb upstream 2.0kb upstream 9679 true SL2.50ch12: 66588896-66598574 Solanum lycopersicum
Solyc12g099440.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 66588896-66590895 Solanum lycopersicum
Solyc12g099440.1 2.0kb downstream 2.0kb downstream 9679 true SL2.50ch12: 66590896-66600574 Solanum lycopersicum
Solyc12g099440.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 66598575-66600574 Solanum lycopersicum
Solyc12g099440.1 5.0kb upstream 5.0kb upstream 12679 true SL2.50ch12: 66585896-66598574 Solanum lycopersicum
Solyc12g099440.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 66585896-66590895 Solanum lycopersicum
Solyc12g099440.1 5.0kb downstream 5.0kb downstream 12679 true SL2.50ch12: 66590896-66603574 Solanum lycopersicum
Solyc12g099440.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 66598575-66603574 Solanum lycopersicum
Solyc12g099440.1 10.0kb upstream 10.0kb upstream 17679 true SL2.50ch12: 66580896-66598574 Solanum lycopersicum
Solyc12g099440.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 66580896-66590895 Solanum lycopersicum
Solyc12g099440.1 10.0kb downstream 10.0kb downstream 17679 true SL2.50ch12: 66590896-66608574 Solanum lycopersicum
Solyc12g099440.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 66598575-66608574 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474651 5263 Asterids View MSA
123740661 5271 Pentapetalae View MSA
122785876 5272 Eudicot View MSA
122047259 5273 Angiosperm View MSA
121345387 5274 Embryophyte View MSA
123424743 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain