Gene : Solyc12g089210.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Description:  Ornithine carbamoyltransferase (AHRD V1 ***- Q9SEX4_CANLI); contains Interpro domain(s) IPR002292 Ornithine carbamoyltransferase
Genomic Order:  2062 Name:  ? Solyc12g089210.1
Secondary Identifier:  ? PAC:36147512
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ARGSYNBSUB-PWY Solanum lycopersicum pathologic  
Slycopersicum ARGSYN-PWY Solanum lycopersicum pathologic  
Slycopersicum CITRULBIO-PWY Solanum lycopersicum pathologic  
Slycopersicum CITRULLINE-DEG-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-4984 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g089210.1 0.5kb upstream 0.5kb upstream 4700 true SL2.50ch12: 64321011-64325710 Solanum lycopersicum
Solyc12g089210.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 64325211-64325710 Solanum lycopersicum
Solyc12g089210.1 0.5kb downstream 0.5kb downstream 4700 true SL2.50ch12: 64320511-64325210 Solanum lycopersicum
Solyc12g089210.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 64320511-64321010 Solanum lycopersicum
Solyc12g089210.1 1.0kb upstream 1.0kb upstream 5200 true SL2.50ch12: 64321011-64326210 Solanum lycopersicum
Solyc12g089210.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 64325211-64326210 Solanum lycopersicum
Solyc12g089210.1 1.0kb downstream 1.0kb downstream 5200 true SL2.50ch12: 64320011-64325210 Solanum lycopersicum
Solyc12g089210.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 64320011-64321010 Solanum lycopersicum
Solyc12g089210.1 2.0kb upstream 2.0kb upstream 6200 true SL2.50ch12: 64321011-64327210 Solanum lycopersicum
Solyc12g089210.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 64325211-64327210 Solanum lycopersicum
Solyc12g089210.1 2.0kb downstream 2.0kb downstream 6200 true SL2.50ch12: 64319011-64325210 Solanum lycopersicum
Solyc12g089210.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 64319011-64321010 Solanum lycopersicum
Solyc12g089210.1 5.0kb upstream 5.0kb upstream 9200 true SL2.50ch12: 64321011-64330210 Solanum lycopersicum
Solyc12g089210.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 64325211-64330210 Solanum lycopersicum
Solyc12g089210.1 5.0kb downstream 5.0kb downstream 9200 true SL2.50ch12: 64316011-64325210 Solanum lycopersicum
Solyc12g089210.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 64316011-64321010 Solanum lycopersicum
Solyc12g089210.1 10.0kb upstream 10.0kb upstream 14200 true SL2.50ch12: 64321011-64335210 Solanum lycopersicum
Solyc12g089210.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 64325211-64335210 Solanum lycopersicum
Solyc12g089210.1 10.0kb downstream 10.0kb downstream 14200 true SL2.50ch12: 64311011-64325210 Solanum lycopersicum
Solyc12g089210.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 64311011-64321010 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477839 5263 Asterids View MSA
123736976 5271 Pentapetalae View MSA
122787582 5272 Eudicot View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain