Gene : Solyc12g096730.1 S. lycopersicum ITAG2.4
Defline:  (1 of 4) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Description:  Polygalacturonase (AHRD V1 ***- O22610_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28
Genomic Order:  2216 Name:  ? Solyc12g096730.1
Secondary Identifier:  ? PAC:36146861
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1081 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g096730.1 0.5kb upstream 0.5kb upstream 2257 true SL2.50ch12: 65525043-65527299 Solanum lycopersicum
Solyc12g096730.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 65525043-65525542 Solanum lycopersicum
Solyc12g096730.1 0.5kb downstream 0.5kb downstream 2257 true SL2.50ch12: 65525543-65527799 Solanum lycopersicum
Solyc12g096730.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 65527300-65527799 Solanum lycopersicum
Solyc12g096730.1 1.0kb upstream 1.0kb upstream 2757 true SL2.50ch12: 65524543-65527299 Solanum lycopersicum
Solyc12g096730.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 65524543-65525542 Solanum lycopersicum
Solyc12g096730.1 1.0kb downstream 1.0kb downstream 2757 true SL2.50ch12: 65525543-65528299 Solanum lycopersicum
Solyc12g096730.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 65527300-65528299 Solanum lycopersicum
Solyc12g096730.1 2.0kb upstream 2.0kb upstream 3757 true SL2.50ch12: 65523543-65527299 Solanum lycopersicum
Solyc12g096730.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 65523543-65525542 Solanum lycopersicum
Solyc12g096730.1 2.0kb downstream 2.0kb downstream 3757 true SL2.50ch12: 65525543-65529299 Solanum lycopersicum
Solyc12g096730.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 65527300-65529299 Solanum lycopersicum
Solyc12g096730.1 5.0kb upstream 5.0kb upstream 6757 true SL2.50ch12: 65520543-65527299 Solanum lycopersicum
Solyc12g096730.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 65520543-65525542 Solanum lycopersicum
Solyc12g096730.1 5.0kb downstream 5.0kb downstream 6757 true SL2.50ch12: 65525543-65532299 Solanum lycopersicum
Solyc12g096730.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 65527300-65532299 Solanum lycopersicum
Solyc12g096730.1 10.0kb upstream 10.0kb upstream 11757 true SL2.50ch12: 65515543-65527299 Solanum lycopersicum
Solyc12g096730.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 65515543-65525542 Solanum lycopersicum
Solyc12g096730.1 10.0kb downstream 10.0kb downstream 11757 true SL2.50ch12: 65525543-65537299 Solanum lycopersicum
Solyc12g096730.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 65527300-65537299 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470897 5263 Asterids View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain