Gene : Solyc12g096680.1 S. lycopersicum ITAG2.4
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2211 Name:  ? Solyc12g096680.1
Secondary Identifier:  ? PAC:36148622
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g096680.1 0.5kb upstream 0.5kb upstream 2465 true SL2.50ch12: 65508218-65510682 Solanum lycopersicum
Solyc12g096680.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 65510183-65510682 Solanum lycopersicum
Solyc12g096680.1 0.5kb downstream 0.5kb downstream 2465 true SL2.50ch12: 65507718-65510182 Solanum lycopersicum
Solyc12g096680.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 65507718-65508217 Solanum lycopersicum
Solyc12g096680.1 1.0kb upstream 1.0kb upstream 2965 true SL2.50ch12: 65508218-65511182 Solanum lycopersicum
Solyc12g096680.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 65510183-65511182 Solanum lycopersicum
Solyc12g096680.1 1.0kb downstream 1.0kb downstream 2965 true SL2.50ch12: 65507218-65510182 Solanum lycopersicum
Solyc12g096680.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 65507218-65508217 Solanum lycopersicum
Solyc12g096680.1 2.0kb upstream 2.0kb upstream 3965 true SL2.50ch12: 65508218-65512182 Solanum lycopersicum
Solyc12g096680.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 65510183-65512182 Solanum lycopersicum
Solyc12g096680.1 2.0kb downstream 2.0kb downstream 3965 true SL2.50ch12: 65506218-65510182 Solanum lycopersicum
Solyc12g096680.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 65506218-65508217 Solanum lycopersicum
Solyc12g096680.1 5.0kb upstream 5.0kb upstream 6965 true SL2.50ch12: 65508218-65515182 Solanum lycopersicum
Solyc12g096680.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 65510183-65515182 Solanum lycopersicum
Solyc12g096680.1 5.0kb downstream 5.0kb downstream 6965 true SL2.50ch12: 65503218-65510182 Solanum lycopersicum
Solyc12g096680.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 65503218-65508217 Solanum lycopersicum
Solyc12g096680.1 10.0kb upstream 10.0kb upstream 11965 true SL2.50ch12: 65508218-65520182 Solanum lycopersicum
Solyc12g096680.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 65510183-65520182 Solanum lycopersicum
Solyc12g096680.1 10.0kb downstream 10.0kb downstream 11965 true SL2.50ch12: 65498218-65510182 Solanum lycopersicum
Solyc12g096680.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 65498218-65508217 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469907 5263 Asterids View MSA
123738274 5271 Pentapetalae View MSA
122790964 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain