Gene : Solyc12g096140.1 S. lycopersicum ITAG2.4

Defline:  (1 of 420) PF13041 - PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2157 Name:  ? Solyc12g096140.1
Secondary Identifier:  ? PAC:36148146

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g096140.1 0.5kb upstream 0.5kb upstream 1523 true SL2.50ch12: 65179407-65180929 Solanum lycopersicum
Solyc12g096140.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 65180430-65180929 Solanum lycopersicum
Solyc12g096140.1 0.5kb downstream 0.5kb downstream 1523 true SL2.50ch12: 65178907-65180429 Solanum lycopersicum
Solyc12g096140.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 65178907-65179406 Solanum lycopersicum
Solyc12g096140.1 1.0kb upstream 1.0kb upstream 2023 true SL2.50ch12: 65179407-65181429 Solanum lycopersicum
Solyc12g096140.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 65180430-65181429 Solanum lycopersicum
Solyc12g096140.1 1.0kb downstream 1.0kb downstream 2023 true SL2.50ch12: 65178407-65180429 Solanum lycopersicum
Solyc12g096140.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 65178407-65179406 Solanum lycopersicum
Solyc12g096140.1 2.0kb upstream 2.0kb upstream 3023 true SL2.50ch12: 65179407-65182429 Solanum lycopersicum
Solyc12g096140.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 65180430-65182429 Solanum lycopersicum
Solyc12g096140.1 2.0kb downstream 2.0kb downstream 3023 true SL2.50ch12: 65177407-65180429 Solanum lycopersicum
Solyc12g096140.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 65177407-65179406 Solanum lycopersicum
Solyc12g096140.1 5.0kb upstream 5.0kb upstream 6023 true SL2.50ch12: 65179407-65185429 Solanum lycopersicum
Solyc12g096140.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 65180430-65185429 Solanum lycopersicum
Solyc12g096140.1 5.0kb downstream 5.0kb downstream 6023 true SL2.50ch12: 65174407-65180429 Solanum lycopersicum
Solyc12g096140.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 65174407-65179406 Solanum lycopersicum
Solyc12g096140.1 10.0kb upstream 10.0kb upstream 11023 true SL2.50ch12: 65179407-65190429 Solanum lycopersicum
Solyc12g096140.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 65180430-65190429 Solanum lycopersicum
Solyc12g096140.1 10.0kb downstream 10.0kb downstream 11023 true SL2.50ch12: 65169407-65180429 Solanum lycopersicum
Solyc12g096140.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 65169407-65179406 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479307 5263 Asterids View MSA
123738772 5271 Pentapetalae View MSA
122795104 5272 Eudicot View MSA
122042665 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121309997 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain