Gene : Solyc12g043020.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 4.2.1.9 - Dihydroxy-acid dehydratase Description:  Dihydroxy-acid dehydratase (AHRD V1 **** A6C1E8_9PLAN); contains Interpro domain(s) IPR004404 Dihydroxy-acid dehydratase
Genomic Order:  1289 Name:  ? Solyc12g043020.1
Secondary Identifier:  ? PAC:36147586
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum BRANCHED-CHAIN-AA-SYN-PWY Solanum lycopersicum pathologic  
Slycopersicum ILEUSYN-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-3001 Solanum lycopersicum pathologic  
Slycopersicum VALSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g043020.1 0.5kb upstream 0.5kb upstream 13394 true SL2.50ch12: 39246269-39259662 Solanum lycopersicum
Solyc12g043020.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 39259163-39259662 Solanum lycopersicum
Solyc12g043020.1 0.5kb downstream 0.5kb downstream 13394 true SL2.50ch12: 39245769-39259162 Solanum lycopersicum
Solyc12g043020.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 39245769-39246268 Solanum lycopersicum
Solyc12g043020.1 1.0kb upstream 1.0kb upstream 13894 true SL2.50ch12: 39246269-39260162 Solanum lycopersicum
Solyc12g043020.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 39259163-39260162 Solanum lycopersicum
Solyc12g043020.1 1.0kb downstream 1.0kb downstream 13894 true SL2.50ch12: 39245269-39259162 Solanum lycopersicum
Solyc12g043020.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 39245269-39246268 Solanum lycopersicum
Solyc12g043020.1 2.0kb upstream 2.0kb upstream 14894 true SL2.50ch12: 39246269-39261162 Solanum lycopersicum
Solyc12g043020.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 39259163-39261162 Solanum lycopersicum
Solyc12g043020.1 2.0kb downstream 2.0kb downstream 14894 true SL2.50ch12: 39244269-39259162 Solanum lycopersicum
Solyc12g043020.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 39244269-39246268 Solanum lycopersicum
Solyc12g043020.1 5.0kb upstream 5.0kb upstream 17894 true SL2.50ch12: 39246269-39264162 Solanum lycopersicum
Solyc12g043020.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 39259163-39264162 Solanum lycopersicum
Solyc12g043020.1 5.0kb downstream 5.0kb downstream 17894 true SL2.50ch12: 39241269-39259162 Solanum lycopersicum
Solyc12g043020.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 39241269-39246268 Solanum lycopersicum
Solyc12g043020.1 10.0kb upstream 10.0kb upstream 22894 true SL2.50ch12: 39246269-39269162 Solanum lycopersicum
Solyc12g043020.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 39259163-39269162 Solanum lycopersicum
Solyc12g043020.1 10.0kb downstream 10.0kb downstream 22894 true SL2.50ch12: 39236269-39259162 Solanum lycopersicum
Solyc12g043020.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 39236269-39246268 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475183 5263 Asterids View MSA
123742145 5271 Pentapetalae View MSA
122787783 5272 Eudicot View MSA
122041651 5273 Angiosperm View MSA
121345047 5274 Embryophyte View MSA
123424997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain