Gene : Solyc12g062540.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR23321:SF30 - 30S RIBOSOMAL PROTEIN S15, CHLOROPLASTIC Description:  Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_VIGUN); contains Interpro domain(s) IPR017444 Ribulose bisphosphate carboxylase, large subunit, N-terminal
Genomic Order:  1081 Name:  ? Solyc12g062540.1
Secondary Identifier:  ? PAC:36148264
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CALVIN-PWY Solanum lycopersicum pathologic  
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5723 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g062540.1 0.5kb upstream 0.5kb upstream 986 true SL2.50ch12: 33812850-33813835 Solanum lycopersicum
Solyc12g062540.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 33812850-33813349 Solanum lycopersicum
Solyc12g062540.1 0.5kb downstream 0.5kb downstream 986 true SL2.50ch12: 33813350-33814335 Solanum lycopersicum
Solyc12g062540.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 33813836-33814335 Solanum lycopersicum
Solyc12g062540.1 1.0kb upstream 1.0kb upstream 1486 true SL2.50ch12: 33812350-33813835 Solanum lycopersicum
Solyc12g062540.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 33812350-33813349 Solanum lycopersicum
Solyc12g062540.1 1.0kb downstream 1.0kb downstream 1486 true SL2.50ch12: 33813350-33814835 Solanum lycopersicum
Solyc12g062540.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 33813836-33814835 Solanum lycopersicum
Solyc12g062540.1 2.0kb upstream 2.0kb upstream 2486 true SL2.50ch12: 33811350-33813835 Solanum lycopersicum
Solyc12g062540.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 33811350-33813349 Solanum lycopersicum
Solyc12g062540.1 2.0kb downstream 2.0kb downstream 2486 true SL2.50ch12: 33813350-33815835 Solanum lycopersicum
Solyc12g062540.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 33813836-33815835 Solanum lycopersicum
Solyc12g062540.1 5.0kb upstream 5.0kb upstream 5486 true SL2.50ch12: 33808350-33813835 Solanum lycopersicum
Solyc12g062540.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 33808350-33813349 Solanum lycopersicum
Solyc12g062540.1 5.0kb downstream 5.0kb downstream 5486 true SL2.50ch12: 33813350-33818835 Solanum lycopersicum
Solyc12g062540.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 33813836-33818835 Solanum lycopersicum
Solyc12g062540.1 10.0kb upstream 10.0kb upstream 10486 true SL2.50ch12: 33803350-33813835 Solanum lycopersicum
Solyc12g062540.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 33803350-33813349 Solanum lycopersicum
Solyc12g062540.1 10.0kb downstream 10.0kb downstream 10486 true SL2.50ch12: 33813350-33823835 Solanum lycopersicum
Solyc12g062540.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 33813836-33823835 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478502 5263 Asterids View MSA
123751247 5271 Pentapetalae View MSA
122773961 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain