Gene : Solyc12g062550.1 S. lycopersicum ITAG2.4
Defline:  (1 of 4) PTHR23321:SF31 - RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATED Description:  Ribulose bisphosphate carboxylase large chain (Fragment) (AHRD V1 ***- C9WEH0_9SOLN); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal
Genomic Order:  1082 Name:  ? Solyc12g062550.1
Secondary Identifier:  ? PAC:36147732
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CALVIN-PWY Solanum lycopersicum pathologic  
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5723 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g062550.1 0.5kb upstream 0.5kb upstream 809 true SL2.50ch12: 33813624-33814432 Solanum lycopersicum
Solyc12g062550.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 33813624-33814123 Solanum lycopersicum
Solyc12g062550.1 0.5kb downstream 0.5kb downstream 809 true SL2.50ch12: 33814124-33814932 Solanum lycopersicum
Solyc12g062550.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 33814433-33814932 Solanum lycopersicum
Solyc12g062550.1 1.0kb upstream 1.0kb upstream 1309 true SL2.50ch12: 33813124-33814432 Solanum lycopersicum
Solyc12g062550.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 33813124-33814123 Solanum lycopersicum
Solyc12g062550.1 1.0kb downstream 1.0kb downstream 1309 true SL2.50ch12: 33814124-33815432 Solanum lycopersicum
Solyc12g062550.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 33814433-33815432 Solanum lycopersicum
Solyc12g062550.1 2.0kb upstream 2.0kb upstream 2309 true SL2.50ch12: 33812124-33814432 Solanum lycopersicum
Solyc12g062550.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 33812124-33814123 Solanum lycopersicum
Solyc12g062550.1 2.0kb downstream 2.0kb downstream 2309 true SL2.50ch12: 33814124-33816432 Solanum lycopersicum
Solyc12g062550.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 33814433-33816432 Solanum lycopersicum
Solyc12g062550.1 5.0kb upstream 5.0kb upstream 5309 true SL2.50ch12: 33809124-33814432 Solanum lycopersicum
Solyc12g062550.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 33809124-33814123 Solanum lycopersicum
Solyc12g062550.1 5.0kb downstream 5.0kb downstream 5309 true SL2.50ch12: 33814124-33819432 Solanum lycopersicum
Solyc12g062550.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 33814433-33819432 Solanum lycopersicum
Solyc12g062550.1 10.0kb upstream 10.0kb upstream 10309 true SL2.50ch12: 33804124-33814432 Solanum lycopersicum
Solyc12g062550.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 33804124-33814123 Solanum lycopersicum
Solyc12g062550.1 10.0kb downstream 10.0kb downstream 10309 true SL2.50ch12: 33814124-33824432 Solanum lycopersicum
Solyc12g062550.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 33814433-33824432 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121372017 5263 Asterids Singleton cluster - no MSA
123751375 5271 Pentapetalae View MSA
122794662 5272 Eudicot View MSA
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain