Gene : Solyc12g062560.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR23321//PTHR23321:SF33 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR // SUBFAMILY NOT NAMED Description:  Ribulose bisphosphate carboxylase large chain (Fragment) (AHRD V1 ***- Q8MEA6_9ERIC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal
Genomic Order:  1083 Name:  ? Solyc12g062560.1
Secondary Identifier:  ? PAC:36148498
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CALVIN-PWY Solanum lycopersicum pathologic  
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5723 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g062560.1 0.5kb upstream 0.5kb upstream 1010 true SL2.50ch12: 33813987-33814996 Solanum lycopersicum
Solyc12g062560.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 33813987-33814486 Solanum lycopersicum
Solyc12g062560.1 0.5kb downstream 0.5kb downstream 1010 true SL2.50ch12: 33814487-33815496 Solanum lycopersicum
Solyc12g062560.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 33814997-33815496 Solanum lycopersicum
Solyc12g062560.1 1.0kb upstream 1.0kb upstream 1510 true SL2.50ch12: 33813487-33814996 Solanum lycopersicum
Solyc12g062560.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 33813487-33814486 Solanum lycopersicum
Solyc12g062560.1 1.0kb downstream 1.0kb downstream 1510 true SL2.50ch12: 33814487-33815996 Solanum lycopersicum
Solyc12g062560.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 33814997-33815996 Solanum lycopersicum
Solyc12g062560.1 2.0kb upstream 2.0kb upstream 2510 true SL2.50ch12: 33812487-33814996 Solanum lycopersicum
Solyc12g062560.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 33812487-33814486 Solanum lycopersicum
Solyc12g062560.1 2.0kb downstream 2.0kb downstream 2510 true SL2.50ch12: 33814487-33816996 Solanum lycopersicum
Solyc12g062560.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 33814997-33816996 Solanum lycopersicum
Solyc12g062560.1 5.0kb upstream 5.0kb upstream 5510 true SL2.50ch12: 33809487-33814996 Solanum lycopersicum
Solyc12g062560.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 33809487-33814486 Solanum lycopersicum
Solyc12g062560.1 5.0kb downstream 5.0kb downstream 5510 true SL2.50ch12: 33814487-33819996 Solanum lycopersicum
Solyc12g062560.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 33814997-33819996 Solanum lycopersicum
Solyc12g062560.1 10.0kb upstream 10.0kb upstream 10510 true SL2.50ch12: 33804487-33814996 Solanum lycopersicum
Solyc12g062560.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 33804487-33814486 Solanum lycopersicum
Solyc12g062560.1 10.0kb downstream 10.0kb downstream 10510 true SL2.50ch12: 33814487-33824996 Solanum lycopersicum
Solyc12g062560.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 33814997-33824996 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121372230 5263 Asterids Singleton cluster - no MSA
123750020 5271 Pentapetalae View MSA
122797399 5272 Eudicot View MSA
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain