Gene : Solyc12g062420.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR23321//PTHR23321:SF29 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR // SUBFAMILY NOT NAMED Description:  Ribulose bisphosphate carboxylase large chain (Fragment) (AHRD V1 ***- B8QEU7_9VIRI); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal
Genomic Order:  1069 Name:  ? Solyc12g062420.1
Secondary Identifier:  ? PAC:36148799
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CALVIN-PWY Solanum lycopersicum pathologic  
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5723 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g062420.1 0.5kb upstream 0.5kb upstream 901 true SL2.50ch12: 32384556-32385456 Solanum lycopersicum
Solyc12g062420.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 32384957-32385456 Solanum lycopersicum
Solyc12g062420.1 0.5kb downstream 0.5kb downstream 901 true SL2.50ch12: 32384056-32384956 Solanum lycopersicum
Solyc12g062420.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 32384056-32384555 Solanum lycopersicum
Solyc12g062420.1 1.0kb upstream 1.0kb upstream 1401 true SL2.50ch12: 32384556-32385956 Solanum lycopersicum
Solyc12g062420.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 32384957-32385956 Solanum lycopersicum
Solyc12g062420.1 1.0kb downstream 1.0kb downstream 1401 true SL2.50ch12: 32383556-32384956 Solanum lycopersicum
Solyc12g062420.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 32383556-32384555 Solanum lycopersicum
Solyc12g062420.1 2.0kb upstream 2.0kb upstream 2401 true SL2.50ch12: 32384556-32386956 Solanum lycopersicum
Solyc12g062420.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 32384957-32386956 Solanum lycopersicum
Solyc12g062420.1 2.0kb downstream 2.0kb downstream 2401 true SL2.50ch12: 32382556-32384956 Solanum lycopersicum
Solyc12g062420.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 32382556-32384555 Solanum lycopersicum
Solyc12g062420.1 5.0kb upstream 5.0kb upstream 5401 true SL2.50ch12: 32384556-32389956 Solanum lycopersicum
Solyc12g062420.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 32384957-32389956 Solanum lycopersicum
Solyc12g062420.1 5.0kb downstream 5.0kb downstream 5401 true SL2.50ch12: 32379556-32384956 Solanum lycopersicum
Solyc12g062420.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 32379556-32384555 Solanum lycopersicum
Solyc12g062420.1 10.0kb upstream 10.0kb upstream 10401 true SL2.50ch12: 32384556-32394956 Solanum lycopersicum
Solyc12g062420.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 32384957-32394956 Solanum lycopersicum
Solyc12g062420.1 10.0kb downstream 10.0kb downstream 10401 true SL2.50ch12: 32374556-32384956 Solanum lycopersicum
Solyc12g062420.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 32374556-32384555 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780125 5273 Angiosperm View MSA
121372313 5263 Asterids Singleton cluster - no MSA
123745193 5271 Pentapetalae View MSA
122771401 5272 Eudicot View MSA
121051752 5274 Embryophyte View MSA
123091827 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain