Gene : Solyc12g035450.1 S. lycopersicum ITAG2.4
Defline:  (1 of 6) 5.4.99.39 - Beta-amyrin synthase / 2,3-oxidosqualene beta-amyrin cyclase Description:  Cycloartenol synthase (AHRD V1 ***- Q8VWY4_COSSP); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
Genomic Order:  1724 Name:  ? Solyc12g035450.1
Secondary Identifier:  ? PAC:36148631
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g035450.1 0.5kb upstream 0.5kb upstream 1872 true SL2.50ch12: 58339300-58341171 Solanum lycopersicum
Solyc12g035450.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 58340672-58341171 Solanum lycopersicum
Solyc12g035450.1 0.5kb downstream 0.5kb downstream 1872 true SL2.50ch12: 58338800-58340671 Solanum lycopersicum
Solyc12g035450.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 58338800-58339299 Solanum lycopersicum
Solyc12g035450.1 1.0kb upstream 1.0kb upstream 2372 true SL2.50ch12: 58339300-58341671 Solanum lycopersicum
Solyc12g035450.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 58340672-58341671 Solanum lycopersicum
Solyc12g035450.1 1.0kb downstream 1.0kb downstream 2372 true SL2.50ch12: 58338300-58340671 Solanum lycopersicum
Solyc12g035450.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 58338300-58339299 Solanum lycopersicum
Solyc12g035450.1 2.0kb upstream 2.0kb upstream 3372 true SL2.50ch12: 58339300-58342671 Solanum lycopersicum
Solyc12g035450.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 58340672-58342671 Solanum lycopersicum
Solyc12g035450.1 2.0kb downstream 2.0kb downstream 3372 true SL2.50ch12: 58337300-58340671 Solanum lycopersicum
Solyc12g035450.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 58337300-58339299 Solanum lycopersicum
Solyc12g035450.1 5.0kb upstream 5.0kb upstream 6372 true SL2.50ch12: 58339300-58345671 Solanum lycopersicum
Solyc12g035450.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 58340672-58345671 Solanum lycopersicum
Solyc12g035450.1 5.0kb downstream 5.0kb downstream 6372 true SL2.50ch12: 58334300-58340671 Solanum lycopersicum
Solyc12g035450.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 58334300-58339299 Solanum lycopersicum
Solyc12g035450.1 10.0kb upstream 10.0kb upstream 11372 true SL2.50ch12: 58339300-58350671 Solanum lycopersicum
Solyc12g035450.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 58340672-58350671 Solanum lycopersicum
Solyc12g035450.1 10.0kb downstream 10.0kb downstream 11372 true SL2.50ch12: 58329300-58340671 Solanum lycopersicum
Solyc12g035450.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 58329300-58339299 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029665 5273 Angiosperm View MSA
121372264 5263 Asterids Singleton cluster - no MSA
123750474 5271 Pentapetalae View MSA
122773671 5272 Eudicot View MSA
121298968 5274 Embryophyte View MSA
123336900 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain