Gene : Solyc12g020050.1 S. lycopersicum ITAG2.4
Defline:  (1 of 6) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  895 Name:  ? Solyc12g020050.1
Secondary Identifier:  ? PAC:36148457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g020050.1 0.5kb upstream 0.5kb upstream 5412 true SL2.50ch12: 13964825-13970236 Solanum lycopersicum
Solyc12g020050.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 13964825-13965324 Solanum lycopersicum
Solyc12g020050.1 0.5kb downstream 0.5kb downstream 5412 true SL2.50ch12: 13965325-13970736 Solanum lycopersicum
Solyc12g020050.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 13970237-13970736 Solanum lycopersicum
Solyc12g020050.1 1.0kb upstream 1.0kb upstream 5912 true SL2.50ch12: 13964325-13970236 Solanum lycopersicum
Solyc12g020050.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 13964325-13965324 Solanum lycopersicum
Solyc12g020050.1 1.0kb downstream 1.0kb downstream 5912 true SL2.50ch12: 13965325-13971236 Solanum lycopersicum
Solyc12g020050.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 13970237-13971236 Solanum lycopersicum
Solyc12g020050.1 2.0kb upstream 2.0kb upstream 6912 true SL2.50ch12: 13963325-13970236 Solanum lycopersicum
Solyc12g020050.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 13963325-13965324 Solanum lycopersicum
Solyc12g020050.1 2.0kb downstream 2.0kb downstream 6912 true SL2.50ch12: 13965325-13972236 Solanum lycopersicum
Solyc12g020050.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 13970237-13972236 Solanum lycopersicum
Solyc12g020050.1 5.0kb upstream 5.0kb upstream 9912 true SL2.50ch12: 13960325-13970236 Solanum lycopersicum
Solyc12g020050.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 13960325-13965324 Solanum lycopersicum
Solyc12g020050.1 5.0kb downstream 5.0kb downstream 9912 true SL2.50ch12: 13965325-13975236 Solanum lycopersicum
Solyc12g020050.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 13970237-13975236 Solanum lycopersicum
Solyc12g020050.1 10.0kb upstream 10.0kb upstream 14912 true SL2.50ch12: 13955325-13970236 Solanum lycopersicum
Solyc12g020050.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 13955325-13965324 Solanum lycopersicum
Solyc12g020050.1 10.0kb downstream 10.0kb downstream 14912 true SL2.50ch12: 13965325-13980236 Solanum lycopersicum
Solyc12g020050.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 13970237-13980236 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475650 5263 Asterids View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain